View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_8 (Length: 491)
Name: NF13273_low_8
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 475
Target Start/End: Complemental strand, 31940464 - 31939998
Alignment:
| Q |
10 |
attattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattcc |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31940464 |
attattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattcc |
31940365 |
T |
|
| Q |
110 |
aaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcccttttag |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31940364 |
aaagaagaaggtaccgtatcttgaattgatattatgtagtactgtcattttatctttgttgctctatgtaaattttaattgtgcttgcttgcctttttag |
31940265 |
T |
|
| Q |
210 |
ggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31940264 |
ggggcaaacttcagggacctcaagggagtgcttgttaaagaaaaaaaggtggaatgggacccctctgttgaaagagtgtatctaaaatctggaaagcctt |
31940165 |
T |
|
| Q |
310 |
tggtactaatcttgtcatgtcttagggacacctttattttgaagttagttctttgttgaccacacac-nnnnnnnccacacaggttccagattatgcaat |
408 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31940164 |
tggtactaatcttgtcttgtcttagggacacatttattttgaagttagttctttgttgaccacacacttttttttccacacaggttccagattatgcaat |
31940065 |
T |
|
| Q |
409 |
gacatttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatatttt |
475 |
Q |
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| T |
31940064 |
gacatttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatatttt |
31939998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 453
Target Start/End: Complemental strand, 13536453 - 13536254
Alignment:
| Q |
258 |
gtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttgtcatgtcttagggacacctttattttgaagttag |
357 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| | |||||||||||||| |||||||| ||| ||| |
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| T |
13536453 |
gtggaatgggacccctctgttgaaagacaattactaaaatctggcaagcctttggtattaatctcttgttgtcttagggacacatttatttttaagctag |
13536354 |
T |
|
| Q |
358 |
tt-ctttgttgaccacacacnnnnnnncca---cacaggttccagattatgcaatgacatttgttcgtgggacctcttctaagtatgtatatatgtacat |
453 |
Q |
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|| | | ||||| |||| || || |||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||| |||| |
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| T |
13536353 |
tttcatagttgatcacatacatttttttgtgtgcataggttccagattatgccatgtcatttgttcgtgggacttcctctaagtatgtatatatgcacat |
13536254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 13536977 - 13536880
Alignment:
| Q |
34 |
caccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatctt |
131 |
Q |
| |
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|||||||||| ||||| ||||||||| || ||| ||||||| | ||||| ||||||||||| |||||||||||| | |||||||| || |||||| |
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| T |
13536977 |
caccaagtggaatgctatatgatcacttcccattggaattaaacaaagatgattatgagagagtctgccacattccacacaagaaggttccctatctt |
13536880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 475
Target Start/End: Complemental strand, 9390797 - 9390351
Alignment:
| Q |
10 |
attattctgctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattcc |
109 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9390797 |
attattctgctgactctcaaagtgcaccaagtggtatgctgtatgatcacagacctttgaaattaaataccgatgactatgagagagtttgccacattcc |
9390698 |
T |
|
| Q |
110 |
aaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcccttttag |
209 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |
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| T |
9390697 |
aaagaagaaggtatcatatcttgaattgatattatgta---ctgttatt----------------atgtaaattttaattgtgcttgcttgcctttttag |
9390617 |
T |
|
| Q |
210 |
ggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
9390616 |
ggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccctcagttgaaagagtgtatctaaaatctggaaagcctt |
9390517 |
T |
|
| Q |
310 |
tggtactaatcttgtcatgtcttagggacacctttattttgaagttagttctttgttgaccac-acacnnnnnnnccacacaggttccagattatgcaat |
408 |
Q |
| |
|
|||||||||||||| | |||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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|
| T |
9390516 |
tggtactaatcttgacttgtctt-gggacacatttattttgaagttagttctttgttgaccacaacctttttttcccacacaggttccagattatgcaat |
9390418 |
T |
|
| Q |
409 |
gacatttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatatttt |
475 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9390417 |
gacatttgttcgtgggacctcttctaagtatgtacatatgtacatctattttaggtcatcatatttt |
9390351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 475
Target Start/End: Complemental strand, 1338640 - 1338185
Alignment:
| Q |
18 |
gctgactatcatagtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaaga |
117 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1338640 |
gctgactctcaaagtgcaccaagtggtatgctgtatgatcataggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaaggaga |
1338541 |
T |
|
| Q |
118 |
aggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcccttttagggggcaaa |
217 |
Q |
| |
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|||| || |||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||| |
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|
| T |
1338540 |
aggttccctatctttaattgatattat---gtactgttattttatctttgttgctccatgtaaattctaattgtgcttgcttgcctttttagggggcaaa |
1338444 |
T |
|
| Q |
218 |
cttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtacta |
317 |
Q |
| |
|
|||||||||||||||||| || |||||||||| ||||||||||||||| ||| || |||||||| ||||||||||||| ||||| ||||||||| |
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|
| T |
1338443 |
cttcagggacctcaagggtgttcttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgtatctaaaatctgggaagcccttggtacta |
1338344 |
T |
|
| Q |
318 |
atcttgtcatgtcttagggacacctttattttgaagttagttctttgttgaccac-acacnnnnnnnccacacaggttccagattatgcaatgacatttg |
416 |
Q |
| |
|
||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||| |||||||||| |
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|
| T |
1338343 |
atcctgtcttgtcttagggacacatttattttgaagttatttctttgttgaccacaaccttttttttccacataggttccagattatgctatgacatttg |
1338244 |
T |
|
| Q |
417 |
ttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatatttt |
475 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
1338243 |
ttcgcgggacctcctctaagtatgtatatatgtacatcaattttttgtcatcatatttt |
1338185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 30 - 369
Target Start/End: Complemental strand, 5640515 - 5640178
Alignment:
| Q |
30 |
agtgcaccaagtggtatgctgtatgatcacaggcctttgaaattaaataccgatgactatgagagagtttgccacattccaaagaagaaggtaccgtatc |
129 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |||||| ||||||||||| || ||| |
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|
| T |
5640515 |
agtgcaccaagtggtctgctgtatgatcacaggccatatctgttaaataacgatgactatgagagagtttgcctcattccgaagaagaaggttcctgatc |
5640416 |
T |
|
| Q |
130 |
ttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttgcttgcc-cttttagggggcaaacttcagggacc |
228 |
Q |
| |
|
||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||| | |||||| ||||||||||||||||||||||||| |
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|
| T |
5640415 |
ttgaattgatattat---gttctgttattttatctttgttgctccctgtaaattttaattgtgcattcttgccttttttagggggcaaacttcagggacc |
5640319 |
T |
|
| Q |
229 |
tcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaatctggaaagcctttggtactaatcttgtcatg |
328 |
Q |
| |
|
| ||||| |||||||| |||| ||||| |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| | || |
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|
| T |
5640318 |
taaagggtgtgcttgtgaaagaaaaaaaagtggagtgggacccctctgttgaaagagtgtatctgaaatctgggaagcctttggtactaatcttctgttg |
5640219 |
T |
|
| Q |
329 |
tcttagggacacctttattttgaagttagttctttgttgac |
369 |
Q |
| |
|
||||| || | |||||||||||||||||||||||||||| |
|
|
| T |
5640218 |
ccttagcgatgcatttattttgaagttagttctttgttgac |
5640178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 475
Target Start/End: Complemental strand, 5640149 - 5640073
Alignment:
| Q |
399 |
attatgcaatgacatttgttcgtgggacctcttctaagtatgtatatatgtacatctattttaggtcatcatatttt |
475 |
Q |
| |
|
||||||| |||| ||||||||| ||||| || ||||||||||||||| || | || |||| | ||||||||||||| |
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|
| T |
5640149 |
attatgctatgaaatttgttcgggggacttcctctaagtatgtatatttgcatatgaatttaatgtcatcatatttt |
5640073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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