View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13273_low_9 (Length: 481)
Name: NF13273_low_9
Description: NF13273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13273_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 20131541 - 20131087
Alignment:
| Q |
11 |
cataggcttagtgattcaggaattggtccagaaaacaagttatttccaaagattaacttacttaatgaaacaagacgacctaaacctgccggcaacggac |
110 |
Q |
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| T |
20131541 |
cataggcttagtgatgcaggaattggtccagaaaacaagttatttccaaagattaacttacttaatgaaacaagacgacctaaacttgccggcaacggac |
20131442 |
T |
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| Q |
111 |
ctgaaaacttgttaaaagatgcatccaatacctgaagtgaagataacgatgacaaggaattaggaagcgagccttctaagttgttagagctgaagtctat |
210 |
Q |
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| T |
20131441 |
ctgaaaacttgttaaacgatgcatccaatacctgaagtgaagataatgatgacaaggaattaggaagcgagccttctaagttgttagagctgaagtctat |
20131342 |
T |
|
| Q |
211 |
catttgaagttgtatgcagcttcttatttcatcgggaaccggccctgaaagacggttcccagagagatctaaaaagttcaaattcctgagatttcctatt |
310 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20131341 |
catttgaagttgtacgcagcttcttatttcatcgggaaccggcgctgaaagacggttcccagagagatctaaaaagttcaaattcctgagatttcctatt |
20131242 |
T |
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| Q |
311 |
gtcttaggaatgcttccagtaatcctattgtttccaagcctcaaccttataagagatttacaactacctatttctgatggtatagaacctgatatatcat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20131241 |
gtcttaggaatgcttccagtaatcctattgtttccaagcctcaaccttataagagatttgcaactacctatttctgatggtatagaacctgatatatcat |
20131142 |
T |
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| Q |
411 |
ttgaaatcaaaagcagttttgtgaggttttgaagctgaaacagtcctgaaggaat |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
20131141 |
ttgaaatcaaaagcagttttgtgaggttttgaagctgaaatagtcctgaaggaat |
20131087 |
T |
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