View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13275_high_1 (Length: 943)

Name: NF13275_high_1
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13275_high_1
NF13275_high_1
[»] scaffold0189 (1 HSPs)
scaffold0189 (1-926)||(17055-17980)
[»] chr5 (23 HSPs)
chr5 (317-919)||(34605715-34606310)
chr5 (1-180)||(34605543-34605721)
chr5 (187-287)||(16172954-16173054)
chr5 (187-296)||(16457815-16457925)
chr5 (187-258)||(19373244-19373315)
chr5 (191-256)||(14656645-14656710)
chr5 (187-260)||(31669022-31669095)
chr5 (217-257)||(15485420-15485460)
chr5 (187-296)||(16773812-16773922)
chr5 (187-259)||(25627062-25627135)
chr5 (220-256)||(8780509-8780545)
chr5 (232-295)||(9948308-9948371)
chr5 (187-296)||(21589293-21589403)
chr5 (187-257)||(30109308-30109379)
chr5 (187-256)||(16436623-16436692)
chr5 (216-260)||(3315249-3315294)
chr5 (187-259)||(7918467-7918540)
chr5 (187-259)||(14285166-14285239)
chr5 (187-260)||(17405574-17405645)
chr5 (223-259)||(25979211-25979248)
chr5 (187-259)||(30883196-30883269)
chr5 (217-254)||(32340340-32340377)
chr5 (187-259)||(34984811-34984884)
[»] chr3 (34 HSPs)
chr3 (187-296)||(40268494-40268603)
chr3 (187-296)||(42799709-42799818)
chr3 (187-285)||(34844376-34844474)
chr3 (221-296)||(40777052-40777127)
chr3 (189-296)||(43303765-43303872)
chr3 (187-285)||(10682916-10683014)
chr3 (187-261)||(18316495-18316569)
chr3 (187-296)||(47454578-47454688)
chr3 (217-296)||(54990737-54990817)
chr3 (217-296)||(28834932-28835013)
chr3 (187-260)||(15034350-15034423)
chr3 (187-295)||(11092132-11092240)
chr3 (187-287)||(42430340-42430438)
chr3 (187-259)||(53863866-53863938)
chr3 (189-295)||(19154638-19154745)
chr3 (190-296)||(30311314-30311421)
chr3 (187-257)||(35623267-35623340)
chr3 (187-288)||(26871473-26871575)
chr3 (187-284)||(7207615-7207712)
chr3 (187-259)||(14186653-14186725)
chr3 (200-296)||(44069776-44069873)
chr3 (189-256)||(8170679-8170747)
chr3 (187-296)||(5499368-5499478)
chr3 (187-257)||(24478160-24478230)
chr3 (217-259)||(31714352-31714394)
chr3 (187-296)||(46518633-46518743)
chr3 (187-259)||(353155-353228)
chr3 (187-259)||(16354890-16354963)
chr3 (189-289)||(19716204-19716305)
chr3 (187-259)||(27093359-27093432)
chr3 (187-259)||(30510197-30510270)
chr3 (187-259)||(37788463-37788536)
chr3 (194-282)||(47236946-47237035)
chr3 (187-259)||(53412950-53413023)
[»] chr8 (23 HSPs)
chr8 (187-296)||(28783065-28783175)
chr8 (187-287)||(6530812-6530912)
chr8 (187-295)||(968367-968476)
chr8 (182-259)||(3624580-3624658)
chr8 (187-296)||(16852345-16852455)
chr8 (187-285)||(34778740-34778838)
chr8 (217-285)||(40136936-40137003)
chr8 (187-289)||(2203497-2203600)
chr8 (187-289)||(29858017-29858120)
chr8 (187-260)||(19703484-19703558)
chr8 (187-252)||(26688870-26688936)
chr8 (187-259)||(18540303-18540376)
chr8 (187-256)||(22268935-22269004)
chr8 (217-296)||(16317646-16317725)
chr8 (187-296)||(11793482-11793592)
chr8 (217-285)||(9126556-9126624)
chr8 (191-254)||(22779664-22779727)
chr8 (191-258)||(29206354-29206421)
chr8 (187-289)||(35287721-35287824)
chr8 (187-273)||(40591737-40591821)
chr8 (187-296)||(29431016-29431126)
chr8 (217-259)||(29855417-29855459)
chr8 (223-287)||(22193334-22193399)
[»] chr2 (30 HSPs)
chr2 (187-296)||(26482098-26482207)
chr2 (187-287)||(3697370-3697470)
chr2 (217-296)||(6099480-6099559)
chr2 (187-289)||(42327363-42327466)
chr2 (187-296)||(37480080-37480190)
chr2 (187-296)||(41908599-41908709)
chr2 (187-280)||(342400-342493)
chr2 (187-287)||(32106571-32106672)
chr2 (187-279)||(16525183-16525275)
chr2 (237-295)||(28966387-28966444)
chr2 (187-260)||(29503276-29503350)
chr2 (187-296)||(42602559-42602669)
chr2 (187-296)||(18825346-18825455)
chr2 (187-294)||(30359659-30359766)
chr2 (237-296)||(14780562-14780621)
chr2 (190-296)||(21213777-21213884)
chr2 (187-296)||(23052484-23052594)
chr2 (184-260)||(26176323-26176396)
chr2 (187-260)||(39714997-39715071)
chr2 (220-257)||(8192480-8192517)
chr2 (187-295)||(19016036-19016145)
chr2 (187-296)||(37755932-37756042)
chr2 (217-287)||(25384571-25384641)
chr2 (184-257)||(42860350-42860424)
chr2 (187-259)||(42922419-42922493)
chr2 (187-292)||(45672343-45672449)
chr2 (217-286)||(7250264-7250333)
chr2 (193-257)||(12086129-12086194)
chr2 (220-257)||(19605974-19606011)
chr2 (190-287)||(39273504-39273601)
[»] chr6 (18 HSPs)
chr6 (187-259)||(6691549-6691621)
chr6 (187-283)||(28028535-28028631)
chr6 (187-257)||(10338174-10338245)
chr6 (189-287)||(20864177-20864274)
chr6 (187-259)||(33549109-33549182)
chr6 (188-260)||(34444809-34444882)
chr6 (197-285)||(7484232-7484320)
chr6 (216-263)||(3433596-3433643)
chr6 (187-296)||(12188264-12188374)
chr6 (217-285)||(6383976-6384043)
chr6 (187-260)||(3869701-3869774)
chr6 (187-259)||(12234505-12234578)
chr6 (220-257)||(17149585-17149622)
chr6 (220-257)||(28741970-28742007)
chr6 (187-264)||(22664-22742)
chr6 (220-257)||(9208283-9208320)
chr6 (187-295)||(24333987-24334096)
chr6 (217-286)||(24762379-24762448)
[»] chr4 (35 HSPs)
chr4 (187-287)||(37980118-37980218)
chr4 (187-296)||(37109312-37109422)
chr4 (187-296)||(29195100-29195209)
chr4 (187-287)||(55256169-55256270)
chr4 (187-260)||(56409956-56410029)
chr4 (187-287)||(25414185-25414285)
chr4 (187-289)||(55427168-55427271)
chr4 (189-287)||(25434630-25434726)
chr4 (187-283)||(37455574-37455670)
chr4 (187-295)||(46295102-46295211)
chr4 (187-289)||(8325347-8325450)
chr4 (189-259)||(49576892-49576963)
chr4 (187-292)||(44865339-44865445)
chr4 (195-260)||(4686125-4686190)
chr4 (187-260)||(21344822-21344895)
chr4 (186-259)||(32475093-32475166)
chr4 (187-256)||(38206127-38206196)
chr4 (217-296)||(32992647-32992727)
chr4 (187-251)||(42281240-42281304)
chr4 (187-289)||(19238545-19238648)
chr4 (187-260)||(37720211-37720285)
chr4 (191-295)||(2184994-2185099)
chr4 (187-259)||(7949452-7949525)
chr4 (217-296)||(23377991-23378071)
chr4 (220-296)||(30938180-30938257)
chr4 (220-296)||(38838835-38838912)
chr4 (189-261)||(4088250-4088322)
chr4 (214-281)||(19220558-19220625)
chr4 (188-260)||(37492715-37492786)
chr4 (187-296)||(7292759-7292869)
chr4 (193-256)||(47183333-47183396)
chr4 (201-259)||(17701894-17701952)
chr4 (187-256)||(46545716-46545786)
chr4 (217-254)||(31141347-31141384)
chr4 (187-295)||(51250484-51250593)
[»] chr7 (30 HSPs)
chr7 (187-283)||(22760868-22760965)
chr7 (187-296)||(41487367-41487474)
chr7 (187-296)||(48125136-48125245)
chr7 (189-260)||(25956290-25956361)
chr7 (187-289)||(38374567-38374670)
chr7 (187-256)||(30579340-30579410)
chr7 (187-259)||(26459408-26459481)
chr7 (187-295)||(5273552-5273661)
chr7 (187-260)||(15905671-15905744)
chr7 (187-295)||(31835197-31835306)
chr7 (187-259)||(43215189-43215262)
chr7 (188-295)||(19553460-19553567)
chr7 (189-260)||(43590914-43590986)
chr7 (187-273)||(5579218-5579305)
chr7 (187-259)||(4566426-4566499)
chr7 (187-259)||(33869443-33869516)
chr7 (187-259)||(39631849-39631922)
chr7 (187-287)||(48039617-48039718)
chr7 (187-254)||(7801185-7801253)
chr7 (192-259)||(18847421-18847488)
chr7 (187-289)||(29538530-29538633)
chr7 (217-260)||(46279049-46279092)
chr7 (187-296)||(11720921-11721031)
chr7 (187-296)||(29385704-29385814)
chr7 (187-259)||(18363701-18363774)
chr7 (220-257)||(22696355-22696392)
chr7 (187-259)||(23552123-23552196)
chr7 (220-257)||(28647004-28647041)
chr7 (187-259)||(30442493-30442566)
chr7 (190-296)||(33460383-33460491)
[»] chr1 (43 HSPs)
chr1 (187-287)||(15581112-15581212)
chr1 (191-285)||(41470583-41470677)
chr1 (187-257)||(37046990-37047060)
chr1 (187-285)||(39012296-39012394)
chr1 (188-289)||(43445969-43446071)
chr1 (187-295)||(21694451-21694557)
chr1 (217-296)||(6127948-6128027)
chr1 (217-296)||(38939237-38939316)
chr1 (188-259)||(48400178-48400249)
chr1 (191-292)||(52029901-52030004)
chr1 (187-260)||(19528324-19528398)
chr1 (187-285)||(39714751-39714849)
chr1 (187-296)||(40257404-40257514)
chr1 (193-289)||(31605816-31605913)
chr1 (187-295)||(36371475-36371584)
chr1 (236-296)||(24019078-24019138)
chr1 (187-287)||(34228879-34228979)
chr1 (189-257)||(39964512-39964580)
chr1 (187-289)||(24730389-24730492)
chr1 (187-289)||(51814499-51814602)
chr1 (187-260)||(4824976-4825050)
chr1 (187-296)||(9165156-9165266)
chr1 (171-296)||(19940833-19940959)
chr1 (182-259)||(33700771-33700849)
chr1 (187-296)||(36428717-36428827)
chr1 (218-287)||(44486128-44486197)
chr1 (220-256)||(24217009-24217045)
chr1 (189-245)||(49101781-49101837)
chr1 (189-260)||(52116778-52116850)
chr1 (194-296)||(2799874-2799977)
chr1 (220-283)||(19480565-19480628)
chr1 (187-258)||(24857830-24857901)
chr1 (217-295)||(39966128-39966207)
chr1 (192-247)||(45232071-45232126)
chr1 (187-260)||(16169975-16170049)
chr1 (187-296)||(16893399-16893509)
chr1 (187-296)||(17424451-17424561)
chr1 (187-288)||(21547449-21547551)
chr1 (217-283)||(44417437-44417502)
chr1 (187-259)||(4566553-4566626)
chr1 (187-259)||(15786318-15786391)
chr1 (236-289)||(45266889-45266942)
chr1 (217-254)||(47360517-47360554)
[»] scaffold0258 (1 HSPs)
scaffold0258 (187-296)||(15284-15394)
[»] scaffold0194 (1 HSPs)
scaffold0194 (187-259)||(13044-13117)
[»] scaffold0299 (1 HSPs)
scaffold0299 (188-259)||(11534-11606)
[»] scaffold0172 (1 HSPs)
scaffold0172 (193-295)||(15739-15842)
[»] scaffold0002 (1 HSPs)
scaffold0002 (187-252)||(94976-95042)


Alignment Details
Target: scaffold0189 (Bit Score: 877; Significance: 0; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 1 - 926
Target Start/End: Complemental strand, 17980 - 17055
Alignment:
Q  1 cacttttatcctttttggtctccacccactggagagtttgagtaagaggacgatgactgacttctttgtccgctttgatggaaggtttttaaatgaatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17980 cacttttatcctttttggtctccacccactggagagtttgagtaagaggccgatgactgacttctttgtccgctttgatggaaggtttttaaatgactta 17881  T
Q  101 agaaagttatcactgaaaagaacctgcacaatcattgaaggaggaatatgaactgaaggtcaagcacatgataacaataacagcctacttgggttggcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17880 agaaagttatcactgaaaagaacctgcacaatcattgaaggaggaatatgaactgaaggtcaagcacatgataagaataacagcctacttgggttggcct 17781  T
Q  201 ggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttcnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  17780 ggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttcaaaa 17681  T
Q  301 nnncatgataagaaaaacaataagtaatattacaagattagcaatccaaataccttccacctggagtttctaaaaatgctactgtctgcattaagcaaat 400  Q
       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17680 aaacatgataagaaaaacaataagtaatattacaagattggcaatccaaataccttccacctggagtttctaaaaatgctactgtctgcgttaagcaaat 17581  T
Q  401 catcaagttgatccaactctttcttggcatcccaaatacctctcgctaaatccttgtcttcatcagcattaaagaaacattggcgttttttagcatcaag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17580 catcaagttgatccaactctttcttggcatcccaaatacctctcgctaaatccttgtcttcatcagcattaaagaaacattggcgttttttagcatcaag 17481  T
Q  501 caccaaatatctccatgcattttcctgacttactagggtcctttcatttcccaatatccatagacaatgcctgttgaatataaaagcaatagtattgatg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17480 caccaaatatctccatgcattttcctgacttactagggtcctttcatttcccaatatccatagacaatgcctgttgaatataaaaacaatagtattgatg 17381  T
Q  601 caaacattcgttttggacaaaaacaaatgcaattgtaacaacacatagtaggttttacctagctctggttagagcaacattagtcctctggttattggaa 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17380 caaacattcgttttggacaaaaacaaatgcaattgtaacaacacatagtaggttttacctagctctggttagagcaacattagtcctctggttattggaa 17281  T
Q  701 atgaacccaagtgaagtactgcaatcagttctgactgttgataagataattatgtcctgctcaccaccctgaaaaccatctattgttttcaccttcacac 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17280 atgaacccaagtgaagtactgcaatcagttctgactgttgataagataattatgtcctgctcaccaccctgaaaaccatctattgttttcaccttcacac 17181  T
Q  801 tgaatccttcgtgactatcataccttttcccaagcatatcttgaattgcaaaaacttgggcagcatatggagacactacacctatactgaggttctcgtt 900  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17180 tgaatccttcgtgactatcataccttctcccaagcatatcttgaattgcaaaaacttgggcagcatatggagacactacacctatactgaggttctcgtt 17081  T
Q  901 tgagtcacgccatgctgcattccagg 926  Q
    ||||||||||||||||||||||||||    
T  17080 tgagtcacgccatgctgcattccagg 17055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 317 - 919
Target Start/End: Original strand, 34605715 - 34606310
Alignment:
Q  317 acaataagtaatattacaagattagcaatccaaataccttccacctggagtttctaaaaatgctactgtctgcattaagcaaatcatcaagttgatccaa 416  Q
    |||||||||||||||| || ||  | ||||| |||||||||||||| |||||||||||||||  ||| ||||  ||||| ||||||| |||||||||||     
T  34605715 acaataagtaatattagaatatcggaaatcctaataccttccacctagagtttctaaaaatgacactatctgagttaagaaaatcataaagttgatccag 34605814  T
Q  417 ctctttcttggcatcccaaatacctctcgctaaatccttgtcttcatcagcattaaagaaacattggcgttttttagcatcaagcaccaaatatctccat 516  Q
    ||||||||||||||||||||||||| || |||| |||| ||| ||||| ||||||||||| ||||| |||||||||||||||||||||||   | |||||    
T  34605815 ctctttcttggcatcccaaatacctttcactaagtcctcgtcctcatccgcattaaagaagcattgacgttttttagcatcaagcaccaatgctttccat 34605914  T
Q  517 gcattttcctgacttactagggtcctttcatttcccaatatccatagacaatgcctgttgaatataaaagcaatagtattgatgcaaacattcgttttgg 616  Q
     |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||  ||||||    
T  34605915 acattatcctgacttactagggttctttcatttcccaatatccatagacaatgcctgttgaatataaaatcaatagcattcatgcaaacattgtttttgg 34606014  T
Q  617 acaaaaacaaatgcaattgtaacaacacatagta--------ggttttacctagctctggttagagcaacattagtcctctggttattggaaatgaaccc 708  Q
    | |||| ||||||||||||||||  |||||||||        ||||||||||||| ||||| |||||||||||||||||||| |               |    
T  34606015 aaaaaatcaaatgcaattgtaacggcacatagtaggttttacggttttacctagccctggtgagagcaacattagtcctctgat---------------c 34606099  T
Q  709 aagtgaagtactgcaatcagttctgactgttgataagataattatgtcctgctcaccaccctgaaaaccatctattgttttcaccttcacactgaatcct 808  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| ||||  ||    
T  34606100 aagtgaagtactgcaatcagttctgacggttgaaaagataataatgtcctgctctccaccctggaaaccatctattgttttcaccttcacattgaaatct 34606199  T
Q  809 tcgtgactatcataccttttcccaagcatatcttgaattgcaaaaacttgggcagcatatggagacactacacctatactgaggttctcgtttgagtcac 908  Q
    |||||  |||||||| | |  ||||||||||| |||||||||| |||||  |||||||| |||||||| || |||||||| ||||||||||||||| ||     
T  34606200 tcgtgtttatcatacttctgtccaagcatatcctgaattgcaacaacttaagcagcataaggagacaccacgcctatactaaggttctcgtttgagccat 34606299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 34605543 - 34605721
Alignment:
Q  1 cacttttatcctttttggtctccacccactggagagtttgagtaagaggacgatgactgacttctttgtccgctttgatggaaggtttttaaatgaatta 100  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||   |||||  || | ||||||||||||| |||||| ||||||||||| |||    
T  34605543 cacttttatcctttttggtctccatccactggaaagtttaagtaagaggctaatgacccacatttttgtccgctttgttggaagatttttaaatgactta 34605642  T
Q  101 agaaagttatcactgaaaagaacctgcacaatcattgaaggaggaatatgaactgaaggtcaagcacatgataacaataa 180  Q
    || ||||||||||| |||||||||||||||||  ||| ||||   ||||||||| ||||||||||||||||| |||||||    
T  34605643 aggaagttatcactaaaaagaacctgcacaatttttggagga-atatatgaactaaaggtcaagcacatgatcacaataa 34605721  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 16173054 - 16172954
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||||||||| || ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||||||| ||||||||    
T  16173054 acttgggttggcctggtagtgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattctcctagttgccaatttcagtaggctagtt 16172955  T
Q  287 t 287  Q
    |    
T  16172954 t 16172954  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 16457815 - 16457925
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||| ||||||||||||||||||||| |  ||||||||||||| ||||| |||||||||||| |||| ||||||| ||  ||||||||  ||||||||||    
T  16457815 acttaggttggcctggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagt 16457914  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  16457915 ttaggttcttc 16457925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 19373244 - 19373315
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 258  Q
    ||||| |||||||||||||| ||||| | |||||||||||||| || |||||||||| | ||||||||||||    
T  19373244 acttgagttggcctggtggtgttggcttgagaccttggagtgtgctactctcaaggttttaggttcgattct 19373315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 14656710 - 14656645
Alignment:
Q  191 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 256  Q
    |||||| |||||| || ||||| | |||||||||||| | ||||||||||||||||||||||||||    
T  14656710 gggttgacctggttgtgttggcttgagaccttggagtttgctcctctcaaggtctcaggttcgatt 14656645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 31669095 - 31669022
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||||||| ||| |||| ||||| |  ||||||||||| | ||||||||||||||| ||||||||||||||    
T  31669095 acttgggttggtctgatggtgttggcttgggaccttggagtctgctcctctcaaggtcttaggttcgattctcc 31669022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 15485460 - 15485420
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  15485460 gaccttggagtgtgctcctctcaaggtctcaggttcgattc 15485420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 16773812 - 16773922
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||| ||||| |||||||||||| | |  ||||| ||||||| |||||| || ||||||||||||||||||||   || ||||||||  |||||||| |    
T  16773812 acttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaat 16773911  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  16773912 ttagcttcttc 16773922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 25627062 - 25627135
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |   || | ||||||| |||||| |||||||||||||||||||||||    
T  25627062 acttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 25627135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 8780509 - 8780545
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgatt 256  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8780509 cttggagtgtgctcctctcaaggtctcaggttcgatt 8780545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 9948308 - 9948371
Alignment:
Q  232 tcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttctt 295  Q
    |||||||||| |||||||||||||||||||||| ||  ||||| || || |||||||| |||||    
T  9948308 tcctctcaagatctcaggttcgattctcctcgacgctgatttcggtaggttagtttagcttctt 9948371  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 21589293 - 21589403
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctc-gaggccaatttcagtgggctag 284  Q
    |||||||||||||||||||||||||| |  ||||| ||||| | || || ||| | |||||||||||||||| |||| |  ||||||||  |||||||||    
T  21589293 acttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattc-cctctggtgccaatttaggtgggctag 21589391  T
Q  285 tttagtttcttc 296  Q
    ||||| ||||||    
T  21589392 tttagcttcttc 21589403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 30109379 - 30109308
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 257  Q
    |||||||||||| ||||||||||||| |  ||||| ||||||| ||||| ||  ||||||||||||||||||    
T  30109379 acttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgattc 30109308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 16436623 - 16436692
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 256  Q
    |||||||||||||| ||||||||||| |  || |||||||||| ||||| |||||||||||| ||||||||    
T  16436623 acttgggttggcctagtggtattggcttggga-cttggagtgtgctcctcctcaaggtctcatgttcgatt 16436692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 260
Target Start/End: Original strand, 3315249 - 3315294
Alignment:
Q  216 agaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||    
T  3315249 agaccttggagtgcgctcctcctcaaggtctcaggttcgattctcc 3315294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 7918540 - 7918467
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |   |||| ||||||  ||||| |||||||||| |||||||||||||    
T  7918540 acttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcgattctc 7918467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 14285166 - 14285239
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||  |||| |||||| |   |||| ||||||| |||||| |||||||||||||||||||||||    
T  14285166 acttgggttggccgagtggaattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 14285239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 17405574 - 17405645
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||||||| |||||||| || || ||||||||| || ||| || |||||||||||||| ||||||||||||    
T  17405574 acttgggttggtctggtggtgttagcttaagacctttgaatgtgct-ctctcaaggtctca-gttcgattctcc 17405645  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 25979211 - 25979248
Alignment:
Q  223 ggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25979211 ggagtgttctcctcctcaaggtctcaggttcgattctc 25979248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 30883269 - 30883196
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    ||||||||||| || ||||||||||| |  ||||| ||||||| ||||| |||||||||||| |||| ||||||    
T  30883269 acttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctc 30883196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 32340377 - 32340340
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcga 254  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  32340377 gaccttggagtgtgctcctctcaaggtcttaggttcga 32340340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 34984811 - 34984884
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    ||||||||||| || ||||||||||| |   |||| ||||||| |||||| ||||||||| |||||||||||||    
T  34984811 acttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctc 34984884  T

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Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 40268494 - 40268603
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||| |||||||||| ||||| |  ||||||||||||  ||||||| |||||||||||||||||||||| ||| ||||||||| ||||| |||||    
T  40268494 acttgggtttgcctggtggtgttggcttgggaccttggagtgggctcctcttaaggtctcaggttcgattctccccgatgccaatttcggtgggttagtt 40268593  T
Q  287 tagtttcttc 296  Q
    ||| ||||||    
T  40268594 tagcttcttc 40268603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 42799818 - 42799709
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| |||||||||||||||||||||||| |||||| ||  ||||||||  |||||| |||    
T  42799818 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgactctcctggattccaatttcgatgggctggtt 42799719  T
Q  287 tagtttcttc 296  Q
    ||| ||||||    
T  42799718 tagcttcttc 42799709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 34844376 - 34844474
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagt 285  Q
    |||||||||| ||||||| | ||||| | |||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||| |||| |||||    
T  34844376 acttgggttgccctggtgttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggttcgattc-cctccagagccaatttcggtggactagt 34844474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 40777052 - 40777127
Alignment:
Q  221 ttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagtttagtttcttc 296  Q
    ||||||||| ||||||||||||||||||||| |||||| ||| || ||||||||| |||||||||||||||||||||    
T  40777052 ttggagtgtgctcctctcaaggtctcaggtttgattct-ctctagtgccaatttcggtgggctagtttagtttcttc 40777127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 43303765 - 43303872
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 288  Q
    ||||||||||||||||||  |||| | ||||||||||| || |||||||| |||||||||||| |||||||| ||  || ||| || ||||||||||||     
T  43303765 ttgggttggcctggtggtgatggcttgagaccttggagcgtgctcctctccaggtctcaggtttgattctccccggtgctaatatcggtgggctagtttg 43303864  T
Q  289 gtttcttc 296  Q
    | ||||||    
T  43303865 gcttcttc 43303872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 10683014 - 10682916
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||  || ||||||||||| | |||||||||||||| || ||||||| ||||||||||| |||||||| |   |||||||||| ||||||||    
T  10683014 acttgggttgatctagtggtattggcttgagaccttggagtgtgcttctctcaaagtctcaggttcaattctccttggtcccaatttcagcgggctagt 10682916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 18316569 - 18316495
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcct 261  Q
    ||||||||||| ||||||||  |||| |  ||||||||||||| ||||||||||||||| |||||||||||||||    
T  18316569 acttgggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgattctcct 18316495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 47454688 - 47454578
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||  || ||||||||||| | ||| |||||||||| |||||| || ||||||||||||||||||||| | | ||||||||  ||||| ||||    
T  47454688 acttgggttgttctagtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagt 47454589  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  47454588 ttagcttcttc 47454578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 54990737 - 54990817
Alignment:
Q  217 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||| | ||||||  |||||||| ||||| ||||||    
T  54990737 gaccttggagcgtgctcctcctcaaggtctcaggttcgattctcctcgatggcaatttaggtgggctaatttagcttcttc 54990817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 28835013 - 28834932
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattct--cctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||||||||||  |||||||||||||||| |||||| |||  || ||  |||||||||||||||||||||| ||||||||    
T  28835013 gaccttggagtgtcttcctctcaaggtctcaagttcgaatctttccccggtgccaatttcagtgggctagttttgtttcttc 28834932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 15034350 - 15034423
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||||||| ||| | |  |||||||||| ||  ||||||||||||||||||||| |||||||    
T  15034350 acttgggttggcctggtggtgttgccttgggaccttggagggtgatcctctcaaggtctcaggttcaattctcc 15034423  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 11092240 - 11092132
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||| ||||| ||||| |  ||||||| ||||| || ||||||||||||||  |||||||||||  |  || |||||| ||||| |||||    
T  11092240 acttgggttggcctagtggtgttggcttgggaccttgtagtgtgctactctcaaggtctcaacttcgattctccctggtgctaatttcggtgggttagtt 11092141  T
Q  287 tagtttctt 295  Q
    | |||||||    
T  11092140 tggtttctt 11092132  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 42430340 - 42430438
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||| ||||||||||| | |  || |||||||||| ||||||||||||||| | |||||||||||| | | ||||||||| | |||||||||    
T  42430340 acttgggttggc-tggtggtattgacttgggatcttggagtgtgctcctctcaaggtctta-gttcgattctccccaatgccaatttcggggggctagtt 42430437  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 53863938 - 53863866
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    |||||||||| ||||||| | ||||| |  ||||||||||||| ||||||||||||||| |||||| ||||||    
T  53863938 acttgggttgtcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctc 53863866  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 295
Target Start/End: Original strand, 19154638 - 19154745
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    |||||||||||| || |||||||| | || |||  |||||| |||||| | ||||||||||||||||||||| | || | ||||||  ||||| ||||||    
T  19154638 ttgggttggcctagttgtattggcttgaggcctgagagtgtgctcctcctaaaggtctcaggttcgattctctttgatgtcaatttgggtgggttagttt 19154737  T
Q  288 agtttctt 295  Q
    ||||||||    
T  19154738 agtttctt 19154745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 30311314 - 30311421
Alignment:
Q  190 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 288  Q
    ||||||||||| ||||||| ||| |  || || ||||||| |||||| ||||||||||||||||||||||| | |  |||||||| || ||| |||||||    
T  30311314 tgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctctttggtgccaatttgagggggttagttta 30311413  T
Q  289 gtttcttc 296  Q
    | ||||||    
T  30311414 gcttcttc 30311421  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 35623340 - 35623267
Alignment:
Q  187 acttgggttggcctggt---ggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||||||||||   ||| ||||| |  ||||||||||||| ||||||||||||||||| |||||||||    
T  35623340 acttgggttggcctggttgtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcgattc 35623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 26871575 - 26871473
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||| ||||| |  ||||||||||| ||||||| ||||| |||| ||||| |||||| | | | ||||||||  |||||||| |    
T  26871575 acttgggttggcctggtggtgttggcttgggaccttggagttttctcctcctcaaagtctgaggtttgattctacccaatgccaatttgggtgggctaat 26871476  T
Q  286 tta 288  Q
    |||    
T  26871475 tta 26871473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 7207615 - 7207712
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctag 284  Q
    |||||||||||| ||||||| ||| | |  ||||||| || ||  |||||| ||||| ||||||||||||||||||   |||||||||||| ||||||    
T  7207615 acttgggttggcttggtggtgttgccttgggaccttgaagggtgatcctcttaaggtttcaggttcgattctcctcagtgccaatttcagtaggctag 7207712  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 14186653 - 14186725
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||| | |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  14186653 acttgggttggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaaggtctcaggttcgattctc 14186725  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 44069776 - 44069873
Alignment:
Q  200 tggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    ||||||| ||||| | ||| |||||||||| |||||| ||||||||||||||| ||||||   ||  ||||||||  |||||||||||||| ||||||    
T  44069776 tggtggtgttggcttgagatcttggagtgtgctcctcctcaaggtctcaggtttgattctttccggtgccaatttaggtgggctagtttagcttcttc 44069873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 8170679 - 8170747
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 256  Q
    |||||||||||| ||||||||||| | | || | ||||||| ||||| |||||||||||||||||||||    
T  8170679 ttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaaggtctcaggttcgatt 8170747  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 5499478 - 5499368
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||||||| | | ||| ||  |||||| ||||| || ||||||| |||||| ||||||| ||  |||||||||| | | ||| |    
T  5499478 acttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctccccggtgccaatttcaatagactaat 5499379  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  5499378 ttagcttcttc 5499368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 24478160 - 24478230
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||||  ||||||||||||| |   || ||| |||||||||||||||||||||| ||||| ||||    
T  24478160 acttgggttggtttggtggtattggcttggtactttgaagtgttctcctctcaaggtctcgggttcaattc 24478230  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 31714352 - 31714394
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||    
T  31714352 gaccttgaagtgtgctcctctcaaggtctcaagttcgattctc 31714394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 46518633 - 46518743
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||| | ||||||||||| |  || || ||||||| ||||| |||||||| ||||||| |||||||   || |||||||| || ||| ||||    
T  46518633 acttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgattctctctgatgccaatttgagggggttagt 46518732  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  46518733 ttagcttcttc 46518743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 353228 - 353155
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||||||||  |||||    ||||||| ||| |||| ||| |||||||||||||||||||||||    
T  353228 acttgggttggcctggtggcgttggctagggaccttgtagtattcttctcctcaaggtctcaggttcgattctc 353155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 16354963 - 16354890
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |   ||||  |||||| ||||| |||| |||||||||||||||||||    
T  16354963 acttgggttggcctagtggtattggcttggaacctgtgagtgtgctcctcctcagggtctcaggttcgattctc 16354890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 289
Target Start/End: Original strand, 19716204 - 19716305
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    |||||||| | ||||||| ||||| |  |||| |||||||| |||||| |||||||||| ||||||||||||| ||  | ||||||  |||||||| |||    
T  19716204 ttgggttgacatggtggtgttggcttgggaccatggagtgtgctcctcctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaattt 19716303  T
Q  288 ag 289  Q
    ||    
T  19716304 ag 19716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 27093432 - 27093359
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |   || | ||||||| ||||| |||||||||||||||| |||||||    
T  27093432 acttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtttgattctc 27093359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 30510270 - 30510197
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||||||| |||||||||| |||| |  ||||| ||||| | ||||| ||| ||||||||||||||||||||    
T  30510270 acttgggttgtcctggtggtactggcttgggacctaggagtatgctccttctcgaggtctcaggttcgattctc 30510197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 37788536 - 37788463
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||  ||||||||| | |   |||| ||||||| |||||| |||||||||||||||||||||||    
T  37788536 acttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctc 37788463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 282
Target Start/End: Complemental strand, 47237035 - 47236946
Alignment:
Q  194 ttggcctggtggtattggcgtaagaccttggagtgttctcctct-caaggtctcaggttcgattctcctcgaggccaatttcagtgggct 282  Q
    ||||||||||||||||||  |  ||||  ||||||| ||||||| |||||||||| |||||||||||| ||  ||||||||  |||||||    
T  47237035 ttggcctggtggtattggtttgggacccgggagtgtgctcctcttcaaggtctcatgttcgattctccccggtgccaatttgggtgggct 47236946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 53412950 - 53413023
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    ||||||||||| || ||||||||||| |   |||| ||||||| |||||| |||||||||||||||| ||||||    
T  53412950 acttgggttggtctagtggtattggcttgtaacctgggagtgtgctcctcctcaaggtctcaggttcaattctc 53413023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 28783065 - 28783175
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||| ||||||||||||| | |||||| ||||||| |||||| ||||||||||| |||||||||||||||  ||||||||  |||||||| |    
T  28783065 acttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaat 28783164  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  28783165 ttagcttcttc 28783175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 6530812 - 6530912
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||||||||| ||||| |  ||||| ||||||| |||||||||| ||||||||||||||||||| ||  |||||| || |||| ||||||    
T  6530812 acttgggttggcctggtggtgttggcttgggacctaggagtgtgctcctctcaatgtctcaggttcgattctccccggtgccaatatcggtggactagtt 6530911  T
Q  287 t 287  Q
    |    
T  6530912 t 6530912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 968367 - 968476
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||| |||||||||||||||||||| |  ||||| ||||||| |||||| || ||||||||||||||||||||  ||| ||||||||  |||||||| |    
T  968367 acttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaat 968466  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  968467 ttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 3624580 - 3624658
Alignment:
Q  182 agcctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||| |||||||||||||| ||||||||||| |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  3624580 agcccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctc 3624658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 16852345 - 16852455
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||| ||||||||||||||||||||||    ||||||||  |||||||| |    
T  16852345 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctatt 16852444  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  16852445 ttagcttcttc 16852455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 34778740 - 34778838
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||| |||||||||| ||||| | |||||||| ||||| ||||| ||||||||||| ||| |||| ||| ||  ||||||||| ||||||||||    
T  34778740 acttgggtttgcctggtggtgttggcttgagaccttgcagtgtgctcctttcaaggtctcaagtttgattttccacggtgccaatttcggtgggctagt 34778838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 40137003 - 40136936
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||  ||||||||| ||||||||||    
T  40137003 gaccttggagtgtgctcctctcaaggtctcaggtttgattctcc-cggtgccaatttcggtgggctagt 40136936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 2203497 - 2203600
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| |||||||||||||| || ||||||| ||  ||||||||  |||||||| |    
T  2203497 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaat 2203596  T
Q  286 ttag 289  Q
    ||||    
T  2203597 ttag 2203600  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 29858120 - 29858017
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||| ||||||||||||||||||| |  ||||  ||||||| |||||| || |||||||||||||||||| |||||  ||||||||  |||||||| |    
T  29858120 acttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcgattcccctcggtgccaatttaggtgggctaat 29858021  T
Q  286 ttag 289  Q
    ||||    
T  29858020 ttag 29858017  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 19703558 - 19703484
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||| ||||||||||| |  |||||  |||||| |||||| ||||||||||||||||||||||||    
T  19703558 acttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctcc 19703484  T

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Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 26688870 - 26688936
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttc 252  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||||| |||||||||||||||||    
T  26688870 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 18540303 - 18540376
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| || ||| |||||||||||||||||||||||    
T  18540303 acttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctc 18540376  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 22269004 - 22268935
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 256  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||| ||||||||||||| ||| ||||    
T  22269004 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcttctcaaggtctcaagtttgatt 22268935  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 16317646 - 16317725
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||| |||||| |||||||||  |||||| |||||||||||   |  |||||||||||||||||||||||| ||||||    
T  16317646 gaccttagagtgtgctcctctcagcgtctcatgttcgattctctctggtgccaatttcagtgggctagtttagcttcttc 16317725  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 11793592 - 11793482
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||| || ||||| || || |  ||||||||||||| |||||| ||||||||| ||||| |||||| | ||  ||||||||  ||||||||||    
T  11793592 acttgggttggtcttgtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtcttaggtttgattcttcccggtgccaatttgggtgggctagt 11793493  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  11793492 ttagcttcttc 11793482  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 9126624 - 9126556
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||| |||||||||||| |||| ||||||||| | ||   |||||||||| |||||||||    
T  9126624 gaccttggagtgtgctcctctcaaggactcaagttcgattcccatctgtgccaatttcattgggctagt 9126556  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 22779664 - 22779727
Alignment:
Q  191 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcga 254  Q
    ||||| ||||||||| || ||| |  ||||||||| ||| ||||||||||||||||||||||||    
T  22779664 gggttagcctggtggcataggcttgggaccttggaatgtgctcctctcaaggtctcaggttcga 22779727  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 29206354 - 29206421
Alignment:
Q  191 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 258  Q
    |||||||||||||||| | ||| |   ||||||| |||| ||||||||||||| ||||||||||||||    
T  29206354 gggttggcctggtggtgtgggcttggtaccttggggtgtgctcctctcaaggtgtcaggttcgattct 29206421  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 35287721 - 35287824
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||| ||||||||||| ||||| | |||  ||||||||| ||||| |||||||| ||| |||||||||||  ||  ||||||||  |||| |||||    
T  35287721 acttgggtaggcctggtggtgttggcttgagattttggagtgtgctcctcctcaaggtatcatgttcgattctctccggtgccaatttgggtggactagt 35287820  T
Q  286 ttag 289  Q
    ||||    
T  35287821 ttag 35287824  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 40591737 - 40591821
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaattt 273  Q
    ||||| |||||||||||||||||||| |  ||| | ||||||| |||  ||||| |||||||||| ||||||| |||| ||||||||    
T  40591737 acttgtgttggcctggtggtattggcttcggacttgggagtgtgctc--ctcaaagtctcaggtttgattctcttcgatgccaattt 40591821  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 29431016 - 29431126
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||| ||||||||| |  ||| | ||||||| ||||| ||  ||| |||||||||||||||| | |  || ||||| ||||||||| |    
T  29431016 acttgggttggcctggcggtattggcttgggacttgggagtgtgctcctccttgaggcctcaggttcgattctctttggtgctaatttgagtgggctaat 29431115  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  29431116 ttagcttcttc 29431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 29855459 - 29855417
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    ||||||| ||||| ||||||| |||||||||||||||||||||    
T  29855459 gaccttgtagtgtgctcctcttaaggtctcaggttcgattctc 29855417  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 22193399 - 22193334
Alignment:
Q  223 ggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    ||||||| |||||| ||||||||| |||||||||||||  ||| | |||||| |||||||||||||    
T  22193399 ggagtgtgctcctcctcaaggtcttaggttcgattctctccgaaggcaatttaagtgggctagttt 22193334  T

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Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 26482098 - 26482207
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||| |||||||||| |||| ||||| |  ||||| ||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||| ||    
T  26482098 acttaggttggcctgatggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaggttcgattctcctcagtgccaatttcagtgggctaatt 26482197  T
Q  287 tagtttcttc 296  Q
    | | ||||||    
T  26482198 tggcttcttc 26482207  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 3697470 - 3697370
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||| ||| |||||||||| |  |||||||||| || |||||||||||||||| ||||||||||||||||  ||||||||| | ||| |||||    
T  3697470 acttgggttggtctgatggtattggcttgggaccttggagagtgctcctctcaaggtctctggttcgattctcctcggtgccaatttcggcgggttagtt 3697371  T
Q  287 t 287  Q
    |    
T  3697370 t 3697370  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 6099559 - 6099480
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||  |||||| || |||||||||||| | ||||||    
T  6099559 gaccttggagtgtgctcctctcaaggtctcaggttcgattctccccgctgccaatatcggtgggctagtttggcttcttc 6099480  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 42327466 - 42327363
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| |||||| ||||||||||||||||||||||| |||  ||||||||  |||||||| |    
T  42327466 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaat 42327367  T
Q  286 ttag 289  Q
    ||||    
T  42327366 ttag 42327363  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 37480080 - 37480190
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||||||||| |  |||||  |||||| |||||| |||||||||||||||||||||||| ||   |||||||  |||||||| |    
T  37480080 acttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaat 37480179  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  37480180 ttagcttcttc 37480190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 41908709 - 41908599
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||| | ||  | |||||||||||||| |||||| ||||||||||| |||||||| ||| ||  ||||||||  ||||||||||    
T  41908709 acttgggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctcaagttcgattatccccggtgccaatttgggtgggctagt 41908610  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  41908609 ttagcttcttc 41908599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 280
Target Start/End: Original strand, 342400 - 342493
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtggg 280  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||| || |||||||||| |||| ||||||||||  ||||||||| |||||    
T  342400 acttgggttggcctggtggtgttggcttgtgaccttggagtgtactcatcgcaaggtctcaagttcaattctcctcggtgccaatttcggtggg 342493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 32106571 - 32106672
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||| ||| | |  ||||||||||||| |||| |||||||||||  || |||||||||  ||  ||||||||||||||||||||    
T  32106571 acttgggttggcctggtggtgttgacttgggaccttggagtgtgctccctctcaaggtcttgggctcgattctctccggtgccaatttcagtgggctagt 32106670  T
Q  286 tt 287  Q
    ||    
T  32106671 tt 32106672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 16525183 - 16525275
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgg 279  Q
    ||||||||||||||| |||| ||||| |  ||| ||||||||| |  ||||||||||||||||||||||||||| ||  ||||||||| ||||    
T  16525183 acttgggttggcctgatggtgttggcttgggacgttggagtgtgcgactctcaaggtctcaggttcgattctccccggtgccaatttcggtgg 16525275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 28966387 - 28966444
Alignment:
Q  237 tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttctt 295  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||    
T  28966387 tcaaggtctcaggttcgattctcc-cgttgccaatttcagtgggctagtttagcttctt 28966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 29503276 - 29503350
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||| ||||||||||  |  ||||| ||||||| |||||| ||||||||||||||||||||||||    
T  29503276 acttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcc 29503350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 42602559 - 42602669
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| |||| ||||||||||| ||||| |||||||  ||  ||||||||  |||||||| |    
T  42602559 acttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaat 42602658  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  42602659 ttagcttcttc 42602669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 18825346 - 18825455
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||  ||||||||| ||||| |  ||||| ||||||| ||||||||||||||||| ||| |||| ||| ||  ||||||||| || ||||||||    
T  18825346 acttgggtttacctggtggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaagtttgattttccccggtgccaatttcggtaggctagtt 18825445  T
Q  287 tagtttcttc 296  Q
     || ||||||    
T  18825446 gagcttcttc 18825455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 30359659 - 30359766
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||| ||||||| ||||| |  ||||||||||||| ||||| ||||||||||||  ||||||||||| |   ||||||||  ||||||||||    
T  30359659 acttgggttggcttggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctca-tttcgattctccccagtgccaatttgggtgggctagt 30359757  T
Q  286 ttagtttct 294  Q
    |||| ||||    
T  30359758 ttagcttct 30359766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 237 - 296
Target Start/End: Original strand, 14780562 - 14780621
Alignment:
Q  237 tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    ||||||||||||||||||| |||| ||| |||||||| ||||||||| ||||| ||||||    
T  14780562 tcaaggtctcaggttcgatcctccccgatgccaatttgagtgggctaatttagcttcttc 14780621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 21213777 - 21213884
Alignment:
Q  190 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttta 288  Q
    |||||||| |||||||||||||| |  ||||| |||||||  ||||| |  ||||||||||||||||||||| ||  ||||||||  ||||||||||||     
T  21213777 tgggttggtctggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccccggtgccaatttaggtgggctagtttt 21213876  T
Q  289 gtttcttc 296  Q
    | ||||||    
T  21213877 gcttcttc 21213884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 23052594 - 23052484
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctag 284  Q
    |||| ||||||||||||||||||||| |  ||| | ||||||| || ||| |||||||||||||||||||||||| | || |||| |||  ||||||||     
T  23052594 acttaggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctcc-ctagtgccagtttgggtgggctaa 23052496  T
Q  285 tttagtttcttc 296  Q
    ||||||||||||    
T  23052495 tttagtttcttc 23052484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 26176396 - 26176323
Alignment:
Q  184 cctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||||||||   ||| | |  |||||||| |||| |||||||||||||||||| |||||||||||    
T  26176396 cctacttgggttggcctggtg---ttgacttgggaccttggggtgtgctcctctcaaggtctcagattcgattctcc 26176323  T

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Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 39714997 - 39715071
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||| ||||||||||| | |  ||||| ||||||| ||||| ||| |||||||||||||||||||||    
T  39714997 acttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctcc 39715071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 8192517 - 8192480
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8192517 cttggagtgtgctcctctcaaggtctcaggttcgattc 8192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 19016036 - 19016145
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||| ||| |||||||||| | |||| | ||||||| ||||| ||| |||||||| ||| |||||||| ||  |||||||| ||| ||||| |    
T  19016036 acttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgattctccccggtgccaatttaagtaggctaat 19016135  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  19016136 ttagcttctt 19016145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 37756042 - 37755932
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctc-gaggccaatttcagtgggctag 284  Q
    |||||||||||| ||||||||||||| |  ||||| ||| ||| ||||| ||| |||||||| |||||| || |||| || |||||||| |||||||||     
T  37756042 acttgggttggcttggtggtattggcttgggacctgggaatgtgctcctactcgaggtctcaagttcgactc-cctctgatgccaatttgagtgggctaa 37755944  T
Q  285 tttagtttcttc 296  Q
    ||||| ||||||    
T  37755943 tttagcttcttc 37755932  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 25384571 - 25384641
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    ||||||||||||| ||||||||| |||||| ||||||||| | ||||  ||||||||  ||||| ||||||    
T  25384571 gaccttggagtgtgctcctctcagggtctcgggttcgattatgctcggtgccaattttggtgggttagttt 25384641  T

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Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 42860350 - 42860424
Alignment:
Q  184 cctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 257  Q
    |||||||| |||||||||||| ||||| | | |||||| ||||||| ||||| ||| |||||||| |||||||||    
T  42860350 cctacttgagttggcctggtgatattgacttgagacctgggagtgtgctcctcctcgaggtctcaagttcgattc 42860424  T

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Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 42922419 - 42922493
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctc-aaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |   |||| ||||||| ||||| ||| |||||||||||||||||||||    
T  42922419 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaaggtctcaggttcgattctc 42922493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 45672449 - 45672343
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||| ||| | | |||||||||||| |  ||||| || ||||||||||||| |||||||||   | ||||||  ||||| ||||    
T  45672449 acttgggttggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcaggttcaattctcctccgtgtcaatttgggtgggttagt 45672350  T
Q  286 ttagttt 292  Q
    |||||||    
T  45672349 ttagttt 45672343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 7250264 - 7250333
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||||| ||||||||||| ||||| ||| |||||  | ||  ||||||||| |||||||||||    
T  7250264 gaccttggagtgtgctcctctcaagatctcaagtttgattcctcccggagccaatttcggtgggctagtt 7250333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 12086194 - 12086129
Alignment:
Q  193 gttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 257  Q
    |||||||||||||||||||| |  ||||| | ||||| ||||| ||||||||||| ||||||||||    
T  12086194 gttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggttcgattc 12086129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 19606011 - 19605974
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||  |||||||||||||||||||||||||||    
T  19606011 cttggagtgcgctcctctcaaggtctcaggttcgattc 19605974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 39273504 - 39273601
Alignment:
Q  190 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    ||||||||||||||| | ||||| | ||| ||||||||||  | ||| ||||||||||| ||  ||||||| ||| || |||||| ||||| ||||||    
T  39273504 tgggttggcctggtgttgttggcttcagatcttggagtgtatttctcccaaggtctcagttttaattctccccgatgcgaatttcggtgggttagttt 39273601  T

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Target: chr6 (Bit Score: 53; Significance: 6e-21; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 6691621 - 6691549
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||||||||| ||| | | |||||||||||||| |||||||||||||||||||||||||||||    
T  6691621 acttgggttggcctggtggtgttgactttagaccttggagtgtgctcctctcaaggtctcaggttcgattctc 6691549  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 28028535 - 28028631
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 283  Q
    |||||||||||||||||||| ||| | |  |||||| |||||  ||||||||||||||||| ||||||||||||  || |||||||||  |||||||    
T  28028535 acttgggttggcctggtggtgttgacttgggacctttgagtgagctcctctcaaggtctcatgttcgattctccctgatgccaatttcgatgggcta 28028631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 10338245 - 10338174
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattc 257  Q
    |||||||||||| ||||||||||||| |  ||||| ||||||| ||||| ||||||||||||||||||||||    
T  10338245 acttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcgattc 10338174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 20864274 - 20864177
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    ||||||| |||||||||| ||||| || ||||||||||||| |||||||||| |||| | |||||||| ||  ||  | ||||||||||||||||||||    
T  20864274 ttgggttagcctggtggtgttggcttaggaccttggagtgtgctcctctcaatgtctta-gttcgattatctccggtgtcaatttcagtgggctagttt 20864177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 33549109 - 33549182
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    ||||||||||| |||||||||||||| |  ||||| ||||||| ||||| ||| ||||||||||||||||||||    
T  33549109 acttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 33549182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 34444809 - 34444882
Alignment:
Q  188 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 260  Q
    ||||||||||||||||||||||| | |  |||||| |||||| ||||| | |||||||||||||||||||||||    
T  34444809 cttgggttggcctggtggtattgacttgggaccttagagtgtgctcctccccaaggtctcaggttcgattctcc 34444882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 7484320 - 7484232
Alignment:
Q  197 gcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||| | |||||||| || || |||| |||||||||||| ||| ||||| || ||  ||||||||| ||||||||||    
T  7484320 gcctggtggtattggcttgagaccttgaagagtgctccgctcaaggtctcacgttagattccccccggtgccaatttcggtgggctagt 7484232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 3433643 - 3433596
Alignment:
Q  216 agaccttggagtgttctcctctcaaggtctcaggttcgattctcctcg 263  Q
    |||||||||||| | |||||||||||||||||||||||||| ||||||    
T  3433643 agaccttggagtttgctcctctcaaggtctcaggttcgattttcctcg 3433596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 12188374 - 12188264
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctag 284  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| |||||||| ||| |||||||||| ||| || |||||||| || ||| |||    
T  12188374 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattct-ctctagtgccaatttgagggggttag 12188276  T
Q  285 tttagtttcttc 296  Q
    ||||| ||||||    
T  12188275 tttagcttcttc 12188264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 6384043 - 6383976
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagt 285  Q
    ||||||||||||| |||||||||||||||||||||| ||   ||||| | ||||||||||||||||||||    
T  6384043 gaccttggagtgtgctcctctcaaggtctcaggttcaat--ccctcgggtgccaatttcagtgggctagt 6383976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 3869701 - 3869774
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||||||||||| |||| ||||| | ||| ||| |||||| || || ||||||||||| ||||||||||||    
T  3869701 acttgggttggcctgatggtgttggcttgagatcttcgagtgtgcttctatcaaggtctcatgttcgattctcc 3869774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 12234578 - 12234505
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctc 259  Q
    |||| ||||||||||||||||||| | |  ||||| ||||||| |||| |||| ||||||||||||||||||||    
T  12234578 acttaggttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctc 12234505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 17149622 - 17149585
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||| |||||||||||||||||||||||||||    
T  17149622 cttggagtgtgctcctctcaaggtctcaggttcgattc 17149585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 28742007 - 28741970
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||| |||||||||||||||||||||||||||    
T  28742007 cttggagtgtgctcctctcaaggtctcaggttcgattc 28741970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 22742 - 22664
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtct-caggttcgattctcctcga 264  Q
    ||||||||||| || ||||| ||||| |  ||||||||||||| ||| ||||||||||| || |||| |||||||||||    
T  22742 acttgggttgggctagtggttttggcttgggaccttggagtgtgctcttctcaaggtctccatgttcaattctcctcga 22664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 9208283 - 9208320
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||| | |||||||||||||||||||||||||||    
T  9208283 cttggagtttgctcctctcaaggtctcaggttcgattc 9208320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 24334096 - 24333987
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||| | |||| ||||| |  ||| ||| ||| | |||||| |||||||||||||||| ||||||  ||  ||||||||  ||||||||||    
T  24334096 acttgggttggccggatggtgttggcttgggacattgcagtatgctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagt 24333997  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  24333996 ttagcttctt 24333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 24762448 - 24762379
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||| |||| ||||||| ||||||| ||||||||| |||| ||  ||||||||  |||||||||||    
T  24762448 gaccttggtgtgtgctcctcttaaggtcttaggttcgatcctccccggtgccaattttggtgggctagtt 24762379  T

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Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 37980218 - 37980118
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||||||| | ||||| |  ||||||||||||| |||||||||||||||||||||||||||||| |   | ||||||||| |||||||||    
T  37980218 acttgggttggcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctccccagtgtcaatttcagcgggctagtt 37980119  T
Q  287 t 287  Q
    |    
T  37980118 t 37980118  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 37109422 - 37109312
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||||||||||||||||||||||||   |  |||||||| || ||| ||||    
T  37109422 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagt 37109323  T
Q  286 ttagtttcttc 296  Q
    |||||||||||    
T  37109322 ttagtttcttc 37109312  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 29195100 - 29195209
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| |||||||||||||| || |||||||||||    | ||||||||  || ||||||||    
T  29195100 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtcgcaagttcgattctctctaatgccaattttggttggctagtt 29195199  T
Q  287 tagtttcttc 296  Q
    ||| ||||||    
T  29195200 tagcttcttc 29195209  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 55256270 - 55256169
Alignment:
Q  187 acttgggttgg-cctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||| ||||||||||||||| |  ||| ||||||||| || | ||||||| ||||||||||||||||||||  ||||||||  ||||||||||    
T  55256270 acttgggttgggcctggtggtattggcttgtgacattggagtgtgcttccctcaaggcctcaggttcgattctcctcggtgccaattttggtgggctagt 55256171  T
Q  286 tt 287  Q
    ||    
T  55256170 tt 55256169  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 56409956 - 56410029
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||| |||||||||| | ||||| |  ||||||||||||| ||||||||||||||||||||||||||||||    
T  56409956 acttgggctggcctggtgctgttggcttgggaccttggagtgtgctcctctcaaggtctcaggttcgattctcc 56410029  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 25414285 - 25414185
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||||||  |||| ||||| | |||||||||||||| |||||||||| |||||||||| |||||||| ||  ||||||||  ||||| |||||    
T  25414285 acttgggttggccttctggtgttggcttgagaccttggagtgtgctcctctcaaagtctcaggtttgattctccccggtgccaattttggtgggttagtt 25414186  T
Q  287 t 287  Q
    |    
T  25414185 t 25414185  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 55427271 - 55427168
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||||||||| |  ||||| ||||| | ||||| ||| ||||||||||||||||||||| ||  ||||||||  |||||||| |    
T  55427271 acttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgattctccgcggtgccaatttgggtgggctaat 55427172  T
Q  286 ttag 289  Q
    ||||    
T  55427171 ttag 55427168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 287
Target Start/End: Complemental strand, 25434726 - 25434630
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    |||||||||||||||||| | ||| |  ||||||||||||| || |||||||||||||||||| |||||||| |   ||||||||||||||||||||||    
T  25434726 ttgggttggcctggtggtgt-ggcttgggaccttggagtgtgcttctctcaaggtctcaggtttgattctcc-cattgccaatttcagtgggctagttt 25434630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 37455574 - 37455670
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagacctt-ggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 283  Q
    |||||||||||||||||||| ||||| |  |||||| ||||| | ||||||||||||||||||||||||||| ||| |  |||||||||| |||||||    
T  37455574 acttgggttggcctggtggtgttggcttgggacctttggagtatgctcctctcaaggtctcaggttcgattcccct-ggtgccaatttcaatgggcta 37455670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 46295102 - 46295211
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||| |||||| ||||| || ||||| |  ||| ||||||||| |||||| |||||||||||||||||||||||| ||  ||||||||  ||||||||||    
T  46295102 acttaggttggtctggtagtgttggcttgggacattggagtgtgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagt 46295201  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  46295202 ttagcttctt 46295211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 8325450 - 8325347
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||| | |||||| ||||| | |||||||||||||| ||| || ||||||||| |||||||||||||| ||  | ||||||  ||||||||||    
T  8325450 acttgggttgggccggtggtgttggcttgagaccttggagtgtgctcatcctcaaggtcttaggttcgattctccccggtgtcaatttgggtgggctagt 8325351  T
Q  286 ttag 289  Q
    ||||    
T  8325350 ttag 8325347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 49576963 - 49576892
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||||||||||||| |  ||| | ||||||| |||||| |||||||||||||||||||||||    
T  49576963 ttgggttggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 49576892  T

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Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 44865339 - 44865445
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||||| |||| ||||| | || |||||  |||| |||||| ||||||||| |||||||||||||| |   ||||||||| |||| |||||    
T  44865339 acttgggttggcctgatggtgttggcttgagtccttgatgtgtgctcctcctcaaggtcttaggttcgattctcccctgtgccaatttcggtggactagt 44865438  T
Q  286 ttagttt 292  Q
    |||||||    
T  44865439 ttagttt 44865445  T

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Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 260
Target Start/End: Complemental strand, 4686190 - 4686125
Alignment:
Q  195 tggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||| |||| ||||| | |||||||||||||| |||||||||| |||||||||| ||||||||    
T  4686190 tggcctgttggtgttggcttgagaccttggagtgtgctcctctcaatgtctcaggtttgattctcc 4686125  T

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Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 21344822 - 21344895
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||||||||||| || | ||||| |  ||||||||||||| ||||||||||||||||| |||| |||||||    
T  21344822 acttgggttggcctgatgatgttggcttgggaccttggagtgtgctcctctcaaggtctcatgttcaattctcc 21344895  T

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Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 32475166 - 32475093
Alignment:
Q  186 tacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    |||||||||||| || ||||| ||||| |  |||| |||||||  |||||||||||||||||||||||||||||    
T  32475166 tacttgggttggtctagtggtgttggcttgggaccctggagtgaactcctctcaaggtctcaggttcgattctc 32475093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Complemental strand, 38206196 - 38206127
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 256  Q
    |||||||||| |||||||||  |||| |  ||||||||||||| ||||||||||||||||||||| ||||    
T  38206196 acttgggttgacctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgatt 38206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 32992647 - 32992727
Alignment:
Q  217 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||| ||  | |||||| ||||| ||||||||| ||||||    
T  32992647 gaccttggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttcttc 32992727  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 42281304 - 42281240
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggtt 251  Q
    ||||||||||||| |||||| ||||| |  ||||||| ||||| |||||||||||||||||||||    
T  42281304 acttgggttggccaggtggtgttggcttgggaccttgtagtgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 19238648 - 19238545
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||||||||| |  ||| | ||||||| ||||| ||| ||||||| ||||||||||||| ||   |||||||  |||||||| |    
T  19238648 acttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggttcgattctccccggtaccaatttgggtgggctaat 19238549  T
Q  286 ttag 289  Q
    ||||    
T  19238548 ttag 19238545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 37720285 - 37720211
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||||| ||||||| |  ||||| ||||||| | ||| ||||||||| |||||||||||||||    
T  37720285 acttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaaggtcccaggttcgattctcc 37720211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 2185099 - 2184994
Alignment:
Q  191 gggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttag 289  Q
    |||||||||| |||||| |||| |   |||| ||||||| ||||| ||||| ||||||||||||||||||  ||| |||||||| || ||| ||||||||    
T  2185099 gggttggcctagtggtaatggcttggaacctgggagtgtgctccttctcaaagtctcaggttcgattctctccgatgccaatttgagggggttagtttag 2185000  T
Q  290 tttctt 295  Q
     |||||    
T  2184999 cttctt 2184994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 7949525 - 7949452
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    ||||||| |||||| | ||||||||| |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  7949525 acttgggctggcctagcggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctc 7949452  T

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Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 23377991 - 23378071
Alignment:
Q  217 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctagtttagtttcttc 296  Q
    ||||| ||||||| |||||| |||||||||||||||||||||| ||| || |||||||| || |||||||||||| ||||||    
T  23377991 gacctgggagtgtgctcctcctcaaggtctcaggttcgattct-ctctagtgccaatttgagggggctagtttagcttcttc 23378071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 30938257 - 30938180
Alignment:
Q  220 cttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||||||| |||||| || ||||||||||||||||||||| | | ||||||||  ||||| |||||||| ||||||    
T  30938257 cttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaatttaggtgggttagtttagcttcttc 30938180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 38838835 - 38838912
Alignment:
Q  220 cttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||||| | |||||| ||||||||| |||||||||||||  ||| | ||||||| |||||||| ||||||||||||    
T  38838835 cttggagtatgctcctcctcaaggtcttaggttcgattctctccgatggcaatttcggtgggctaatttagtttcttc 38838912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 4088250 - 4088322
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcct 261  Q
    |||||||||||  ||||| ||||| | | ||||||||| ||  |||| |||||||||||||||||||||||||    
T  4088250 ttgggttggccgcgtggtgttggcttgaaaccttggagggtggtcctttcaaggtctcaggttcgattctcct 4088322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 19220558 - 19220625
Alignment:
Q  214 taagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggc 281  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| ||||| || |||||||||| |||||    
T  19220558 taagatcttggagtgtgctcctctcaaggtttcaggttcgatt-tcctctagtgccaatttcaatgggc 19220625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 37492786 - 37492715
Alignment:
Q  188 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||| || ||||  |  |||||||||||||  ||||||||||||||||||||||| |||||    
T  37492786 cttgggttggcctggtagtgttggt-tgggaccttggagtgtgatcctctcaaggtctcaggttcgactctcc 37492715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 7292869 - 7292759
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgag-gccaatttcagtgggctag 284  Q
    ||||||||||| || ||||||||||| |   |||| ||||||| |||||| |||| ||||||||||||||||| ||| || |||||||| || ||| |||    
T  7292869 acttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattct-ctctagtgccaatttgagggggttag 7292771  T
Q  285 tttagtttcttc 296  Q
    ||||| ||||||    
T  7292770 tttagcttcttc 7292759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 47183333 - 47183396
Alignment:
Q  193 gttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgatt 256  Q
    |||| |||| |||| ||||| | ||||||||||||||  |||||||||| ||||||||||||||    
T  47183333 gttgacctgatggtgttggcttgagaccttggagtgtgatcctctcaagatctcaggttcgatt 47183396  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 17701894 - 17701952
Alignment:
Q  201 ggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    |||||| ||||| | |||| ||||| ||| |||||||||||||||||| ||||||||||    
T  17701894 ggtggtgttggcttgagactttggaatgtgctcctctcaaggtctcagattcgattctc 17701952  T

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Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 46545716 - 46545786
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 256  Q
    |||||||||||||| ||||||||||| | ||||||  |||||| ||||| |||||| |||||| |||||||    
T  46545716 acttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcagattcgatt 46545786  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 31141384 - 31141347
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcga 254  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  31141384 gaccttggagtgtgctcctctcaaggtctgaggttcga 31141347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 51250593 - 51250484
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||||||||| |  || || ||||||| ||||  |||||| ||||| ||||||||| |  ||  ||||||||  |||||||| |    
T  51250593 acttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagttcgattccctccggtgccaatttgggtgggctaat 51250494  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  51250493 ttagcttctt 51250484  T

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Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 22760868 - 22760965
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 283  Q
    ||||||||||| |||||||||||| | |  ||||| ||||||| |||||| |||||||||||||||||||||||| ||| |||||||| |||||||||    
T  22760868 acttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtgggcta 22760965  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 41487367 - 41487474
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||||||||||||||| |  ||| | |||||||||||  ||||||||||||||||||||||| | ||  ||||||||  |||||||| ||    
T  41487367 acttgggttggcctggtggtattggcttgggacttgggagtgttctc--ctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaatt 41487464  T
Q  287 tagtttcttc 296  Q
    ||| ||||||    
T  41487465 tagcttcttc 41487474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 48125245 - 48125136
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||| |||||||| ||||| |  ||||||||||||| ||||||  |||||||||||||| ||| ||| ||  ||||||||| |||||||||||    
T  48125245 acttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggttcaattttccccggtgccaatttcggtgggctagtt 48125146  T
Q  287 tagtttcttc 296  Q
    | | ||||||    
T  48125145 tggcttcttc 48125136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 25956361 - 25956290
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||| ||||||||||| |  ||||||||||||| ||||||||||||||| |||||| |||||||    
T  25956361 ttgggttggcctagtggtattggcttgggaccttggagtgtgctcctctcaaggtcttaggttcaattctcc 25956290  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 38374670 - 38374567
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||| ||||||| ||||| |  |||||| |||||| |||||| ||||||||| |||||||||||||| ||  ||||||||  ||||||||||    
T  38374670 acttgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagt 38374571  T
Q  286 ttag 289  Q
    ||||    
T  38374570 ttag 38374567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 30579340 - 30579410
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgatt 256  Q
    |||||||||||||||||||||||||| | |||||| ||||||| | ||| |||||||||||||||||||||    
T  30579340 acttgggttggcctggtggtattggcttgagacctgggagtgtccacctcctcaaggtctcaggttcgatt 30579410  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 26459481 - 26459408
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||||||||||||||||||||||||    
T  26459481 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 295
Target Start/End: Complemental strand, 5273661 - 5273552
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||| ||||| |  |||||| |||||| ||||| |||||||||| ||||| |||| ||  ||  ||||||||  ||||||||||    
T  5273661 acttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggtttgattgtctccggtgccaatttgggtgggctagt 5273562  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  5273561 ttagcttctt 5273552  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 15905744 - 15905671
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||| ||||||||| |  ||||| ||||||| ||||||   |||||||||||||||||||||    
T  15905744 acttgggttggcctggcggtattggcttgggacctgggagtgtgctcctccttaggtctcaggttcgattctcc 15905671  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 31835197 - 31835306
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||| ||||| |  |  |||||||||| |||||| |||||||||||||||||||| |||  |  ||||||||  | ||||||||    
T  31835197 acttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtctcaggttcgattatccctggtgccaattttggcgggctagt 31835296  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  31835297 ttagcttctt 31835306  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 43215189 - 43215262
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    ||||||||||| || ||||||||||| |  ||||| ||||||| |||||| |||||||||||||||||||||||    
T  43215189 acttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctc 43215262  T

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Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 19553460 - 19553567
Alignment:
Q  188 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||||||||||||||||| |  ||||| ||||||| ||||| |||||||||| |||||| ||||||| ||   |||||||  |||||||| ||    
T  19553460 cttgggttggcctggtggtattggc-ttggacctgggagtgtgctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactt 19553558  T
Q  287 tagtttctt 295  Q
    ||| |||||    
T  19553559 tagcttctt 19553567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Original strand, 43590914 - 43590986
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||||||||||| |  ||| | ||||||| ||||| ||||| |||||||||||||||||||    
T  43590914 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctcc 43590986  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 5579305 - 5579218
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaattt 273  Q
    |||||||||| ||||||||| ||||| |  ||||||||||||| ||||| |||||||||||||||| || ||||| ||  ||||||||    
T  5579305 acttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtttgactctccccggtgccaattt 5579218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 4566499 - 4566426
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcc-tctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||| | |  |||||||||||||  ||| ||||||||||||||||| |||||||    
T  4566499 acttgggttggcctagtggtattgacttcggaccttggagtgtattccttctcaaggtctcaggtttgattctc 4566426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 33869516 - 33869443
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| || |||||||| | |||||| | ||||| ||||| ||||||||||| ||||||||||||    
T  33869516 acttgggttggcctagtagtattggcttgagacctggaagtgtgctccttctcaaggtctctggttcgattctc 33869443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 39631849 - 39631922
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||||||| |  ||||| |||||   |||||| |||||||||||||||||||||||    
T  39631849 acttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgattctc 39631922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 48039718 - 48039617
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||| ||||| |  || |||||||| | ||||| | ||||||||||||||| |||||||  |  ||||||||| || |||||||    
T  48039718 acttgggttggcctggtggtgttggcttgcgatcttggagtatgctccttcgcaaggtctcaggttctattctccctggtgccaatttcggttggctagt 48039619  T
Q  286 tt 287  Q
    ||    
T  48039618 tt 48039617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 7801185 - 7801253
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcga 254  Q
    |||||| ||||||||||||||||| | |  ||||| ||||||| |||||| ||||||||||||||||||    
T  7801185 acttggtttggcctggtggtattgacttgggacctgggagtgtgctcctcttcaaggtctcaggttcga 7801253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 18847488 - 18847421
Alignment:
Q  192 ggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    ||||||||||||||| ||||| | ||| ||| |||||| ||||||||||| ||||| ||||| |||||    
T  18847488 ggttggcctggtggtgttggcttgagatcttcgagtgtgctcctctcaagatctcaagttcgtttctc 18847421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 29538633 - 29538530
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||| | ||||| ||| | | |||| ||||||| | ||||| |||||||||||| ||||||||||||  || |||||||| |||| | ||||    
T  29538633 acttgggttggcattgtggtgttgacttgagacattggagtatactccttctcaaggtctcaagttcgattctccctgatgccaatttgagtgagttagt 29538534  T
Q  286 ttag 289  Q
    ||||    
T  29538533 ttag 29538530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 46279049 - 46279092
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcc 260  Q
    ||||||||||||| |||||||||||||||| |||| ||||||||    
T  46279049 gaccttggagtgtgctcctctcaaggtctccggtttgattctcc 46279092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 11721031 - 11720921
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||| ||||||||||||||||||||| |  ||||| ||| ||| ||||| || ||||| |||| ||||||||||| |   ||||||||  |||||||| |    
T  11721031 acttcggttggcctggtggtattggcttgggacctgggaatgtgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaat 11720932  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  11720931 ttagcttcttc 11720921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 29385814 - 29385704
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||| | |||| ||||| |  ||| ||||||||| |||||| ||||||||||||||| ||||||| | |  ||||||||  |||||||| |    
T  29385814 acttgggttggccggatggtgttggcttgggactttggagtgtgctcctcctcaaggtctcaggtttgattctctttggtgccaatttgggtgggctact 29385715  T
Q  286 ttagtttcttc 296  Q
    || | ||||||    
T  29385714 tttgcttcttc 29385704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 18363701 - 18363774
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||||||| ||| | |||  | ||||||| |||||| ||||||||||||||| |||||||    
T  18363701 acttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctcaggtttgattctc 18363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 22696355 - 22696392
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  22696355 cttggagtgtgctcctctcaaggtctcaggtttgattc 22696392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 23552123 - 23552196
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||| ||||| | |  ||||| ||||||| |||||| ||||||||||| |||||||||||    
T  23552123 acttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctc 23552196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 28647004 - 28647041
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||| || ||||||||||||||||||||||||    
T  28647004 cttggagtgtgcttctctcaaggtctcaggttcgattc 28647041  T

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Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 30442493 - 30442566
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||  ||||||||||| |  ||||| ||||| | |||||| ||||||||| |||||||||||||    
T  30442493 acttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcgattctc 30442566  T

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Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 296
Target Start/End: Complemental strand, 33460491 - 33460383
Alignment:
Q  190 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctc--tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    ||||||||  ||||||||||||  |  ||||| |||||||  |||||  |||||||||||| ||||||||||| ||  | ||||||  ||||||||||||    
T  33460491 tgggttggtttggtggtattggtttgggacctaggagtgtggtcctccttcaaggtctcagattcgattctccccggtgtcaatttatgtgggctagttt 33460392  T
Q  288 agtttcttc 296  Q
    || ||||||    
T  33460391 agcttcttc 33460383  T

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Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 187 - 287
Target Start/End: Complemental strand, 15581212 - 15581112
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||||||||||||| ||||| |  ||||||||||||| ||||||| |||||||||||||| ||||||| ||  ||  ||||| |||||||||||    
T  15581212 acttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctcaggttcaattctccccggtgctgatttcggtgggctagtt 15581113  T
Q  287 t 287  Q
    |    
T  15581112 t 15581112  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 41470677 - 41470583
Alignment:
Q  191 gggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||| |||||| ||||| | |||||||||||| | ||||||||||||||||| ||||||||| || |   ||||||||||||||||||||    
T  41470677 gggttggcccggtggtgttggcttgagaccttggagtatgctcctctcaaggtctcaagttcgattccccacagtgccaatttcagtgggctagt 41470583  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 37046990 - 37047060
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    ||||||||||| |||||||| ||||| |  ||||||||||||| ||||||||||||||||||||| |||||    
T  37046990 acttgggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattc 37047060  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 39012296 - 39012394
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||| ||||||||| ||||| ||||| |  ||||||||||||| ||| ||||||||||| ||||| ||||| |||||  ||||||||| ||||||||||    
T  39012296 actttggttggcctagtggtgttggcttgggaccttggagtgtgctcttctcaaggtcttaggtttgattcccctcggtgccaatttcggtgggctagt 39012394  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 43445969 - 43446071
Alignment:
Q  188 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||||||||| || |||| ||||| |  | ||||||||||| |||||| ||||||||||| |||||||||||| ||  |||||||| ||||||||||||    
T  43445969 cttgggttggcttgatggtgttggcttgggtccttggagtgtgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtt 43446068  T
Q  287 tag 289  Q
    |||    
T  43446069 tag 43446071  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 21694451 - 21694557
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    |||||||||| ||||||||||||||| | |||| | ||||||| ||||||  |||||||||||||||||||| |||   ||||||||   ||| ||||||    
T  21694451 acttgggttgacctggtggtattggcttgagacttgggagtgtgctcctc--aaggtctcaggttcgattcttctcagtgccaatttggctggactagtt 21694548  T
Q  287 tagtttctt 295  Q
    |||||||||    
T  21694549 tagtttctt 21694557  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 6128027 - 6127948
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||||||| || ||||||||||||||||| |||||||||||| ||  ||||||||  |||||||||||| | ||||||    
T  6128027 gaccttggagcgtgctcctctcaaggtctcaagttcgattctccccggtgccaattttggtgggctagtttggcttcttc 6127948  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 38939237 - 38939316
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    ||||||||||||| |||||||||||||||| |||| |||||||| | | | ||||||| |||||||||||| | ||||||    
T  38939237 gaccttggagtgtgctcctctcaaggtctctggtttgattctccccaatgtcaatttcggtgggctagtttggcttcttc 38939316  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 48400178 - 48400249
Alignment:
Q  188 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| |||||||||| |  |||||||||| |  |||||||||||||||||||| ||||||||    
T  48400178 cttgggttggcctgatggtattggcttgggaccttggagcgcactcctctcaaggtctcaggtgcgattctc 48400249  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 292
Target Start/End: Complemental strand, 52030004 - 52029901
Alignment:
Q  191 gggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattct-cctcgaggccaatttcagtgggctagttta 288  Q
    ||||||||  |||||||||| | | |||||| ||||||| ||||| ||||||||||||||||||||||| || ||| ||||||||  |||||||| ||||    
T  52030004 gggttggctaggtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgattctcccccgatgccaatttgggtgggctaattta 52029905  T
Q  289 gttt 292  Q
    ||||    
T  52029904 gttt 52029901  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 19528398 - 19528324
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||||||||||||| |  || ||  |||||| ||||| |||||||||||||||||||||||||    
T  19528398 acttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctcc 19528324  T

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Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 39714849 - 39714751
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||| | ||||  ||||| |  || |||||||||| ||||||||||||||||| ||| |||||||||||  ||| ||||| ||||||||||    
T  39714849 acttgggttggcatagtggcgttggcttgggatcttggagtgtgctcctctcaaggtctcaagtttgattctcctcggtgccgatttcggtgggctagt 39714751  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 40257404 - 40257514
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||||||||||||||| | |||||| ||||||| ||||| ||| |||||||| |||| |||||   ||  | ||||||  ||||||||||    
T  40257404 acttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagttcaattctatccggtgtcaatttgggtgggctagt 40257503  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  40257504 ttagcttcttc 40257514  T

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Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 289
Target Start/End: Complemental strand, 31605913 - 31605816
Alignment:
Q  193 gttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttag 289  Q
    ||||||||| |||| ||||| |  ||||||| ||||| |||||| ||||||||||| |||||||||||| ||  ||||||||  ||||||||||||||    
T  31605913 gttggcctgatggtgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagtttag 31605816  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 36371475 - 36371584
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |   |||| ||||||| |||||| ||||||||| |||||||||||||   || |||||||| || ||| ||||    
T  36371475 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctctgatgccaatttgagggggttagt 36371574  T
Q  286 ttagtttctt 295  Q
    |||| |||||    
T  36371575 ttagcttctt 36371584  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 24019078 - 24019138
Alignment:
Q  236 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttcttc 296  Q
    |||||||||| |||||||||||||||||   |||||||| |||||||||||||| ||||||    
T  24019078 ctcaaggtcttaggttcgattctcctcggtaccaatttcggtgggctagtttagcttcttc 24019138  T

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Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 34228879 - 34228979
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtt 286  Q
    ||||| ||||| |||||||| ||||| |  ||||| |||||||  |||||||||||||||||||| |||||||  ||  ||||||||  |||||||||||    
T  34228879 acttgagttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctcaggttggattctctccggtgccaattttggtgggctagtt 34228978  T
Q  287 t 287  Q
    |    
T  34228979 t 34228979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 39964512 - 39964580
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattc 257  Q
    |||||||||||| | ||| ||||| |  ||||||||||||| ||||||||||||||||||||| |||||    
T  39964512 ttgggttggcctagaggtgttggcttgcgaccttggagtgtgctcctctcaaggtctcaggtttgattc 39964580  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 24730389 - 24730492
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||| | | ||| || ||||||| |||||| |||||||| |||||| ||| |||||||  ||||||||  |||||||| |    
T  24730389 acttgggttggcctagtggtattgtcttgagatctgggagtgtgctcctcttcaaggtcccaggtttgatcctcctcggtgccaatttgggtgggctaat 24730488  T
Q  286 ttag 289  Q
    ||||    
T  24730489 ttag 24730492  T

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Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 51814499 - 51814602
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||||| |||||||| | | ||| ||  |||||| |||||| |||||||||||||||||||||||  ||  ||||||||  |||||||| |    
T  51814499 acttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaat 51814598  T
Q  286 ttag 289  Q
    ||||    
T  51814599 ttag 51814602  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 4824976 - 4825050
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 260  Q
    ||||||||||| ||| |||| ||||| |  ||||||||||||| |||||| ||||||||||||||| ||||||||    
T  4824976 acttgggttggtctgatggtgttggcttgggaccttggagtgtgctcctcttcaaggtctcaggtttgattctcc 4825050  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 9165266 - 9165156
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||||| ||||||| ||||| ||||| ||||||||||| ||||||   |  |||||||| || ||| || |    
T  9165266 acttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctctggtgccaatttgagggggttact 9165167  T
Q  286 ttagtttcttc 296  Q
    |||||||||||    
T  9165166 ttagtttcttc 9165156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 296
Target Start/End: Complemental strand, 19940959 - 19940833
Alignment:
Q  171 ataacaataacagcctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggcca 269  Q
    |||| ||||||| || ||||||||||| |||||||| || || |  | ||||||||||| |||||| | ||||||||||||| |||||||  ||  ||||    
T  19940959 ataataataacaacccacttgggttggtctggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctctccggtgcca 19940860  T
Q  270 atttcagtgggctagtttagtttcttc 296  Q
    ||||  ||||||| |||||| ||||||    
T  19940859 atttatgtgggctggtttagcttcttc 19940833  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 33700849 - 33700771
Alignment:
Q  182 agcctacttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||| |||||||||||||| ||||||||||| |   | || ||||||| |||||| |||||||||||||||||||||||    
T  33700849 agcccacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 33700771  T

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Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 36428717 - 36428827
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||||| |||||| ||||| |   |||||||||| | |||||| ||||||||||| ||| |||||||| ||  ||||||||  ||||||||||    
T  36428717 acttgggttggccgggtggtgttggcttggtaccttggagtatgctcctcctcaaggtctcatgtttgattctccccggtgccaatttgggtgggctagt 36428816  T
Q  286 ttagtttcttc 296  Q
    || | ||||||    
T  36428817 tttgcttcttc 36428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 44486197 - 44486128
Alignment:
Q  218 accttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagttt 287  Q
    |||||||||||| |||||||||||||||||  ||| ||||||| ||  ||||||||| ||||| ||||||    
T  44486197 accttggagtgtgctcctctcaaggtctcaaattcaattctccccggtgccaatttcggtgggttagttt 44486128  T

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Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 24217009 - 24217045
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgatt 256  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24217009 cttggagtgtgctcctctcaaggtctcaggttcgatt 24217045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 49101837 - 49101781
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtct 245  Q
    |||||||||||| ||| | ||||| | |||||||||||||| |||||||||||||||    
T  49101837 ttgggttggcctagtgttgttggcttcagaccttggagtgtgctcctctcaaggtct 49101781  T

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Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 52116850 - 52116778
Alignment:
Q  189 ttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcc 260  Q
    |||||||||||||||||||||||| |  ||| | ||||||| ||||| ||||| ||||||||||| |||||||    
T  52116850 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcaattctcc 52116778  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 2799874 - 2799977
Alignment:
Q  194 ttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagttt 292  Q
    ||||||| ||||||| ||| | ||| || ||||||| |||||| |||||||||||||||||||||||   |  |||||||| || ||| |||||||| ||    
T  2799874 ttggcctagtggtataggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgagggggttagtttagctt 2799973  T
Q  293 cttc 296  Q
    ||||    
T  2799974 cttc 2799977  T

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Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 283
Target Start/End: Original strand, 19480565 - 19480628
Alignment:
Q  220 cttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 283  Q
    |||||||||| |||||||||||||||||  |||||||| || ||  |||||||| |||||||||    
T  19480565 cttggagtgtgctcctctcaaggtctcacattcgattccccgcggtgccaattttagtgggcta 19480628  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 24857901 - 24857830
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggttcgattct 258  Q
    |||||||||||||||||||| |||||    ||||||||||||  || |||||||| ||||||||| ||||||    
T  24857901 acttgggttggcctggtggtgttggctagggaccttggagtgggcttctctcaagctctcaggtttgattct 24857830  T

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Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 39966128 - 39966207
Alignment:
Q  217 gaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtttctt 295  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||| ||  || |||||  ||| |||||||||| |||||    
T  39966128 gaccttggagtgtactcctcctcaaggtctcaggttcgtttctccccggtgctaatttgggtgtgctagtttagcttctt 39966207  T

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Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 45232071 - 45232126
Alignment:
Q  192 ggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctca 247  Q
    ||||||||| ||||| | ||| |||||||||||||||  |||||||||||||||||    
T  45232071 ggttggcctagtggtgtaggcttaagaccttggagtgcgctcctctcaaggtctca 45232126  T

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Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 16170049 - 16169975
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcc 260  Q
    ||||||||| |||||||||||||| | |  ||||| |||||||  ||||| ||||||| ||||||||||||||||    
T  16170049 acttgggttagcctggtggtattgacttgggacctgggagtgtgttcctcctcaaggtttcaggttcgattctcc 16169975  T

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Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 16893399 - 16893509
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||| |||| |||||||||| | |||  | ||||||| |||||| || ||||||||||||||||| ||  ||  | |||||| ||||||||| |    
T  16893399 acttgggttgacctgttggtattggcttgagatttgggagtgtactcctcctcgaggtctcaggttcgattttctccggtgtcaatttgagtgggctaat 16893498  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  16893499 ttagcttcttc 16893509  T

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Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 17424561 - 17424451
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||| ||| |||| ||  ||| |||||||||||| | |||||| | |||||| ||| ||||||| || |||  ||||||||  ||||||||||    
T  17424561 acttgggttggtctgatggtgttaacgtgagaccttggagtatgctcctcgttaaggtcccagtttcgattatcttcggtgccaatttgggtgggctagt 17424462  T
Q  286 ttagtttcttc 296  Q
    |||||| ||||    
T  17424461 ttagttacttc 17424451  T

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Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 21547551 - 21547449
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    |||||||||||||| ||||||||||| |  ||| | |||| || ||||| ||| |||| |||||||||||||||   || ||||||||  ||||||||||    
T  21547551 acttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctgatgccaatttaggtgggctagt 21547452  T
Q  286 tta 288  Q
    |||    
T  21547451 tta 21547449  T

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Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 283
Target Start/End: Complemental strand, 44417502 - 44417437
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggcta 283  Q
    ||||||||||||| || |||||||||||||||||| ||||| || ||  |||||||||||| |||||    
T  44417502 gaccttggagtgtgctgctctcaaggtctcaggtttgattc-ccccggtgccaatttcagtaggcta 44417437  T

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Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 4566553 - 4566626
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||||||||||||| ||| ||||||| |   |||| ||||||| |||||| ||| |||||||||||||||||||    
T  4566553 acttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctc 4566626  T

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Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 15786391 - 15786318
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    ||||||||||| || || |||||||| |  || || ||||||| |||||| |||||||||||||||||||||||    
T  15786391 acttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 15786318  T

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Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 45266889 - 45266942
Alignment:
Q  236 ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttag 289  Q
    ||||||||||||||||||||||||| ||  ||||||||   |||||||||||||    
T  45266889 ctcaaggtctcaggttcgattctccccggtgccaatttggatgggctagtttag 45266942  T

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Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 47360554 - 47360517
Alignment:
Q  217 gaccttggagtgttctcctctcaaggtctcaggttcga 254  Q
    ||||||||||||| ||||||||||| ||||||||||||    
T  47360554 gaccttggagtgtgctcctctcaagatctcaggttcga 47360517  T

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Target: scaffold0258 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 15394 - 15284
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagt 285  Q
    ||||||||||| |||||||||||||| |  ||||| ||||||| ||||| ||| ||||||||||||||||||||   || ||||||||  |||||||| |    
T  15394 acttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaat 15295  T
Q  286 ttagtttcttc 296  Q
    |||| ||||||    
T  15294 ttagcttcttc 15284  T

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Target: scaffold0194 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 13117 - 13044
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctc 259  Q
    |||| ||||||| ||||||||||||| | ||| || ||||||| |||||| |||||||||||||||||||||||    
T  13117 acttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 13044  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 11534 - 11606
Alignment:
Q  188 cttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttcgattctc 259  Q
    |||||| |||||||||||||||||| |  || || ||||||| ||||| ||| ||||||||||||||||||||    
T  11534 cttgggatggcctggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctc 11606  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 15842 - 15739
Alignment:
Q  193 gttggcctggtggtattggcgtaagaccttggagtgttctcctc-tcaaggtctcaggttcgattctcctcgaggccaatttcagtgggctagtttagtt 291  Q
    |||||||||||||||||||| |  ||  ||||||| | |||||| ||||||||||| ||| |||||||| ||  ||||||||  |||||||| ||||| |    
T  15842 gttggcctggtggtattggcttgggattttggagtatgctcctcctcaaggtctcaagtttgattctccgcggtgccaatttgggtgggctaatttagct 15743  T
Q  292 tctt 295  Q
    ||||    
T  15742 tctt 15739  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 95042 - 94976
Alignment:
Q  187 acttgggttggcctggtggtattggcgtaagaccttggagtgttctcct-ctcaaggtctcaggttc 252  Q
    |||||||||||||| ||||||||||| |   |||| ||||||| ||||| |||||||||||||||||    
T  95042 acttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctcaggttc 94976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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