View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_high_11 (Length: 295)
Name: NF13275_high_11
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 17136357 - 17136248
Alignment:
| Q |
10 |
aagaatatgtatcgggaagattctgcatatttcatacaaaaacagcaaatagagacaatcaagcagcccctctttcttaaattttcatctgtggggagct |
109 |
Q |
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||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17136357 |
aagaaaatgtgttgggaagattctgcagatttcatacaaaaacagcaaatagagacaatcaagcagcccctctttcttaaattttcatctgtggggagct |
17136258 |
T |
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| Q |
110 |
tgttgtgaag |
119 |
Q |
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|||||||||| |
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| T |
17136257 |
tgttgtgaag |
17136248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 17136132 - 17136027
Alignment:
| Q |
118 |
agatcaccatcagatgcagaattctagcataacttgtcctgcatatcagaagaaggcagactgatattgtggatttgagcagttagagcagcatctctgt |
217 |
Q |
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||||| ||||||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
17136132 |
agatccccatcagctgcagtattccagcataacttgtcctgcatatcagaagaaggcagggtgatattgtggatttgagcagttagagcagcatctctat |
17136033 |
T |
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| Q |
218 |
gaatga |
223 |
Q |
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|||||| |
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| T |
17136032 |
gaatga |
17136027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 6937300 - 6937409
Alignment:
| Q |
10 |
aagaatatgtatcgggaagattctgcatatttcatacaaaaacagcaaatagagacaatcaagcagcccctctttcttaaattttcatctgtggggagct |
109 |
Q |
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||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6937300 |
aagaaaatgtgttgggaagattctgcagatttcatacaaaaacagcaaatagagacaatcaagcagcccctctttcttaaattttcatctgtggggagct |
6937399 |
T |
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| Q |
110 |
tgttgtgaag |
119 |
Q |
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|||||||||| |
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| T |
6937400 |
tgttgtgaag |
6937409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 24718322 - 24718386
Alignment:
| Q |
47 |
aaaaacagcaaatagagacaatcaagcagcccctctttcttaaattttcatctgtggggagcttg |
111 |
Q |
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||||||| |||||||||||||| | || || || |||||||| ||||||||||||||||||||| |
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| T |
24718322 |
aaaaacaacaaatagagacaattatacaacctctatttcttaagttttcatctgtggggagcttg |
24718386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 25639126 - 25639190
Alignment:
| Q |
46 |
caaaaacagcaaatagagacaatcaagcagcccctctttcttaaattttcatctgtggggagctt |
110 |
Q |
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|||||||| |||| ||| ||||| | |||||||||||| | |||||||||||||| |||||||| |
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| T |
25639126 |
caaaaacaacaaacagacacaataatgcagcccctcttacgcaaattttcatctgttgggagctt |
25639190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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