View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13275_high_13 (Length: 255)

Name: NF13275_high_13
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13275_high_13
NF13275_high_13
[»] chr8 (3 HSPs)
chr8 (57-232)||(42202641-42202816)
chr8 (73-229)||(44684426-44684582)
chr8 (130-167)||(3578048-3578085)
[»] chr5 (4 HSPs)
chr5 (86-228)||(3678241-3678382)
chr5 (80-232)||(2756301-2756453)
chr5 (78-228)||(42628996-42629146)
chr5 (73-170)||(3761007-3761104)
[»] chr4 (4 HSPs)
chr4 (86-228)||(55329106-55329248)
chr4 (78-225)||(18848013-18848160)
chr4 (73-232)||(42111001-42111160)
chr4 (79-206)||(55353539-55353666)
[»] chr2 (2 HSPs)
chr2 (109-228)||(38971004-38971123)
chr2 (89-170)||(16080465-16080546)
[»] chr7 (4 HSPs)
chr7 (78-228)||(6232163-6232314)
chr7 (78-227)||(48888137-48888286)
chr7 (79-199)||(19883466-19883586)
chr7 (78-206)||(44346457-44346585)
[»] chr6 (1 HSPs)
chr6 (78-228)||(380662-380813)
[»] chr3 (1 HSPs)
chr3 (78-227)||(51361229-51361378)
[»] scaffold0691 (1 HSPs)
scaffold0691 (73-232)||(1130-1289)
[»] chr1 (1 HSPs)
chr1 (73-170)||(13155021-13155117)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 57 - 232
Target Start/End: Complemental strand, 42202816 - 42202641
Alignment:
Q  57 acctgcgagctctagaaccataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagagg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42202816 acctgcgagctctagaaccataagtcccagacacctctaaaactgccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagagg 42202717  T
Q  157 caaggaggactcttaagtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataat 232  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42202716 caaggaggactcttaagtctagaattcacccaattccacaaaatcaccttaatttcctcaactatttcaccataat 42202641  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 44684582 - 44684426
Alignment:
Q  73 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 172  Q
    |||| ||||||||||||||||||||||| ||||| || ||  |  ||||||||  | ||||||||||||||||| ||| ||||||| |||||||||||||    
T  44684582 accaaaagtcccagacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcataaaagaggcagggaggactcttaa 44684483  T
Q  173 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccat 229  Q
    || | | | ||||||||||||| || | ||||||||| || ||||| ||||| ||||    
T  44684482 gttttgtaatcgcccaattccaagagagcaccttaatgtcatcaacaatttccccat 44684426  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 3578048 - 3578085
Alignment:
Q  130 gggttccaacaccactcgtaatagaggcaaggaggact 167  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  3578048 gggttccaacaccactcgtaaaagaggcaaagaggact 3578085  T

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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 3678241 - 3678382
Alignment:
Q  86 gacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgc 185  Q
    ||||||||||||||| ||| | |||||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| | || |    
T  3678241 gacacctctaaaactgccc-acctatcttaataagcattcgatggggttccaacacaacttgtaatagaggcaaggaggactcttaagtctagtaatcac 3678339  T
Q  186 ccaattccacgaaatcaccttaatttcctcaactatttcacca 228  Q
    |||||||||||||||||||||||| |||||||| |||||||||    
T  3678340 ccaattccacgaaatcaccttaatctcctcaacaatttcacca 3678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 2756301 - 2756453
Alignment:
Q  80 gtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagc 179  Q
    ||||| ||| ||||||||||| ||||| |||||||| ||| ||||   | ||||||||||||||||||||||| ||||| ||||| ||||| |||||||     
T  2756301 gtcccggacgcctctaaaactaccccaactatctcagtaaacatttcttggggttccaacaccactcgtaataaaggcacggaggcctctttagtctaga 2756400  T
Q  180 attcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataat 232  Q
    |  |  |||||||||||||| ||||||||| || ||||| |||||||||||||    
T  2756401 aaccatccaattccacgaaagcaccttaatctcatcaacaatttcaccataat 2756453  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 42628996 - 42629146
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 177  Q
    ||||||| ||| ||||||||||| ||||| ||||||||  |  |||||  | ||||||| ||||||||| ||||||||||| |||||||| || ||||||    
T  42628996 aagtcccggacgcctctaaaactaccccaactatctcagaagacattccttggggttccgacaccactcataatagaggcagggaggacttttcagtcta 42629095  T
Q  178 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacca 228  Q
    | |  ||||||||||||||||| |||| ||||||| ||||| |||||||||    
T  42629096 gtaaccgcccaattccacgaaagcaccataatttcatcaacaatttcacca 42629146  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 170
Target Start/End: Original strand, 3761007 - 3761104
Alignment:
Q  73 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 170  Q
    |||| |||||||| |||||||||||||| ||||| |||| ||| ||| |||||  | |||||| |||| ||||||||||||||||| |||| ||||||    
T  3761007 accaaaagtcccaaacacctctaaaactaccccagctatatcagtaaacattccttggggttcaaacagcactcgtaatagaggcagggagaactctt 3761104  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 55329248 - 55329106
Alignment:
Q  86 gacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgc 185  Q
    ||||||||||||||| ||||| ||||||||||||||||||  |  ||||||||||||||||||||||||||||||||| |||||||||||| | |||||     
T  55329248 gacacctctaaaactgccccacctatctcaataagcattccttgaggttccaacaccactcgtaatagaggcaaggagaactcttaagtcttgaattcgt 55329149  T
Q  186 ccaattccacgaaatcaccttaatttcctcaactatttcacca 228  Q
     ||||| ||||||||||||||||||||||| || |||||||||    
T  55329148 tcaatttcacgaaatcaccttaatttcctccacaatttcacca 55329106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 225
Target Start/End: Complemental strand, 18848160 - 18848013
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 177  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  18848160 aagtcccggacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcgtaatagaggcagggaggacttttaagtcta 18848061  T
Q  178 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttca 225  Q
    | |  ||||||||||||| ||| ||||||||| || ||||| ||||||    
T  18848060 gtaaccgcccaattccaccaaagcaccttaatgtcatcaacaatttca 18848013  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 42111001 - 42111160
Alignment:
Q  73 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 172  Q
    |||| ||||||| ||||||||||||||| ||||| || ||  |  ||||||||  | |||||||||||||||||  || |||||||  ||||||||||||    
T  42111001 accaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttggggttccaacaccactcaaaaaagaggcagtgaggactcttaa 42111100  T
Q  173 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataat 232  Q
    |||| | | ||||||||||||| || | ||||||||| || ||||| ||||| |||||||    
T  42111101 gtcttgtaatcgcccaattccaagagagcaccttaatgtcatcaacaatttccccataat 42111160  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 55353666 - 55353539
Alignment:
Q  79 agtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctag 178  Q
    |||||| | ||||||| ||||| ||||| ||||| ||| | |||||   | |||||||| ||||| |||||| |||||||||||||||| |||||||| |    
T  55353666 agtccctgccacctctgaaactaccccacctatcgcaaaaggcatttcttggggttccagcaccaatcgtaaaagaggcaaggaggacttttaagtctgg 55353567  T
Q  179 cattcgcccaattccacgaaatcacctt 206  Q
     |||||||||||||||||| ||||||||    
T  55353566 aattcgcccaattccacgagatcacctt 55353539  T

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Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 109 - 228
Target Start/End: Complemental strand, 38971123 - 38971004
Alignment:
Q  109 tatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctagcattcgcccaattccacgaaatcaccttaa 208  Q
    |||||||||||||||||  | |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||||||||||||||||||||||||    
T  38971123 tatctcaataagcattctttggggttccaacaccactcgtaatagaggcaatgaggacttttaagtctagaatttgcccaattccacgaaatcaccttaa 38971024  T
Q  209 tttcctcaactatttcacca 228  Q
    ||||||| || |||||||||    
T  38971023 tttcctccacaatttcacca 38971004  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 16080546 - 16080465
Alignment:
Q  89 acctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 170  Q
    |||||||||||| |||||  | |||||  || |||||  | ||||||||||||||||| ||| |||||||||||||||||||    
T  16080546 acctctaaaactaccccaattttctcatcaaacattccttggggttccaacaccactcataaaagaggcaaggaggactctt 16080465  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 228
Target Start/End: Complemental strand, 6232314 - 6232163
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 176  Q
    ||||||| ||||||||||||||| |||||  | ||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  6232314 aagtcccggacacctctaaaactgccccacattatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtct 6232215  T
Q  177 agcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacca 228  Q
    || ||| |||||||||||||||||||||||||| ||||| || | |||||||    
T  6232214 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcacca 6232163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 48888286 - 48888137
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 177  Q
    ||||||| |||||||||| |||| ||||| | ||||||| |  |||||  | ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48888286 aagtcccggacacctctagaactaccccaccaatctcaaaagacattccttggggttccaacaccactcgtaatagaggcaaggaggactctttagtcta 48888187  T
Q  178 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacc 227  Q
    | |||| ||||||||||||| | ||||||||| || ||||| ||||||||    
T  48888186 gaattcacccaattccacgagagcaccttaatatcatcaaccatttcacc 48888137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 19883466 - 19883586
Alignment:
Q  79 agtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtctag 178  Q
    |||||| ||||||||||||||| ||||| |||||||||||| |||||  | ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  19883466 agtcccggacacctctaaaactaccccaactatctcaataaacattccttggggttccaacaccactcgtaatagaggcacggaggactctttagtctag 19883565  T
Q  179 cattcgcccaattccacgaaa 199  Q
        |||||||||||||||||    
T  19883566 acaccgcccaattccacgaaa 19883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 206
Target Start/End: Complemental strand, 44346585 - 44346457
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 177  Q
    |||||||  |||||||| ||||||||||| ||| | ||| | ||||||  | |||||||| ||||||| |||| |||||||||||||||| |||||||||    
T  44346585 aagtccctaacacctctgaaacttccccacctaacgcaaaaggcattctttggggttccagcaccacttgtaaaagaggcaaggaggacttttaagtcta 44346486  T
Q  178 gcattcgcccaattccacgaaatcacctt 206  Q
    | |||||||||||| ||||||| ||||||    
T  44346485 gaattcgcccaattacacgaaagcacctt 44346457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 78 - 228
Target Start/End: Original strand, 380662 - 380813
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatct-atctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtct 176  Q
    ||||||| ||||||||||||||| |||||  | ||||||||||||||||  | |||||||| |||||||||||||||||||| ||||||||| |||||||    
T  380662 aagtcccggacacctctaaaactgccccacgttatctcaataagcattccttggggttccagcaccactcgtaatagaggcatggaggactcctaagtct 380761  T
Q  177 agcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacca 228  Q
    || ||| |||||||||||||||||||||||||| ||||| || | |||||||    
T  380762 agaattagcccaattccacgaaatcaccttaatatcctccaccaattcacca 380813  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 51361378 - 51361229
Alignment:
Q  78 aagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaagtcta 177  Q
    ||||||| ||||||||||||||| ||||| ||||||||||| ||||||  | ||||||||||||||||| ||||||||||| |||| ||| || ||||||    
T  51361378 aagtccctgacacctctaaaactaccccaactatctcaataggcattccttggggttccaacaccactcataatagaggcagggagaacttttgagtcta 51361279  T
Q  178 gcattcgcccaattccacgaaatcaccttaatttcctcaactatttcacc 227  Q
    | |  || |||||||||| ||| ||||||||| || | ||| ||||||||    
T  51361278 gtaaccgtccaattccacaaaagcaccttaatgtcataaacaatttcacc 51361229  T

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Target: scaffold0691 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 1289 - 1130
Alignment:
Q  73 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactcttaa 172  Q
    |||| ||||||| ||||||||||||||| ||||| || ||  |  ||||||||  | || |||||||||||||| ||| ||||||| |||||||||||||    
T  1289 accaaaagtcccggacacctctaaaactaccccacctgtcggagcaagcattccttgggcttccaacaccactcataaaagaggcagggaggactcttaa 1190  T
Q  173 gtctagcattcgcccaattccacgaaatcaccttaatttcctcaactatttcaccataat 232  Q
    |||| | | ||||||||||||| |  | ||||||||| || ||||| ||||| |||||||    
T  1189 gtcttgtaatcgcccaattccaagggagcaccttaatgtcatcaacaatttccccataat 1130  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 13155117 - 13155021
Alignment:
Q  73 accataagtcccagacacctctaaaacttccccatctatctcaataagcattcgatagggttccaacaccactcgtaatagaggcaaggaggactctt 170  Q
    |||| |||||||| ||||||||||| || ||| | || ||||| ||| |||||  |||||||| |||||||||||||||||||||||| |||||||||    
T  13155117 accaaaagtcccaaacacctctaaa-ctacccgagctttctcagtaaacattctttagggttcaaacaccactcgtaatagaggcaagtaggactctt 13155021  T

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