View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_high_15 (Length: 241)
Name: NF13275_high_15
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 28260610 - 28260367
Alignment:
| Q |
1 |
tgtaacatgtataataccatcacatatatgttaaacaatgcatgtattcaaaacaattgatgtctaac---ttaaaattcaagaaagtggcaatactaat |
97 |
Q |
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| T |
28260610 |
tgtaacatgtataataccatcacatatatgttaaacaatacatgtattcaaaacaattgatcataaatgggttagtgtttgagaaagtggcaatactaat |
28260511 |
T |
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| Q |
98 |
aatattttgtgttatttttcttacaaatattttaagacagtcccaatcatcgacaagaggttgaccagttgatcgaaaatcgaacatcatagcagatc-- |
195 |
Q |
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| T |
28260510 |
aatattttgtgttatttttcttacaagtattttaagacagttccaatcatcgacaagaggttggtcaattgaccgaaaatcaaacatcatagcagagctc |
28260411 |
T |
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| Q |
196 |
-tcttcttttctccaaacaaaatatttcctatgagatcgatatt |
238 |
Q |
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| T |
28260410 |
ttcttcttttctccaaacaaaatattttctatgagatcgatatt |
28260367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 29929510 - 29929336
Alignment:
| Q |
64 |
ctaacttaaaattcaagaaagtggcaatactaataatattttgtgttatttttcttacaaatattttaagacagtcccaatcatcgacaagaggttgacc |
163 |
Q |
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| T |
29929510 |
ctaacttaaaattcaagatagtggcaatactaataatattttgtgttattcttcttacaagtattttaagacagttccaatcatcgattagaggttgacc |
29929411 |
T |
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| Q |
164 |
agttgatcgaaaatcgaacatcatagcagatctcttcttttctccaaacaaaatatttcctatgagatcgatatt |
238 |
Q |
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| T |
29929410 |
agctgaacgtaaatcagacatcataatggagctcttcttttctccaaacaaaatatttcctatgagatggatatt |
29929336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 29929611 - 29929557
Alignment:
| Q |
4 |
aacatgtataataccatcacatatatgttaaacaatgcatgtattcaaaacaatt |
58 |
Q |
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| T |
29929611 |
aacatgtataataccatcatatatatgttaaacaatgcatgtatttaaagcaatt |
29929557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 2288291 - 2288335
Alignment:
| Q |
112 |
tttttcttacaaatattttaagacagtcccaatcatcgacaagag |
156 |
Q |
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| T |
2288291 |
tttttcttacaagcattttaagacaatcccaatcatccacaagag |
2288335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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