View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_high_18 (Length: 237)
Name: NF13275_high_18
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 1099279 - 1099432
Alignment:
| Q |
1 |
acatctgcagtaatatttacttgagcataaacccaaataaatataattgaacaaacatacacatctnnnnnnn-gtaaatattgaataaaattaagagca |
99 |
Q |
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| T |
1099279 |
acatctgcagtaatatttacttgagcataaacccaaataaatataattgaacacacatacacatctaaaaaaaagtaaatattgaataaaattaagagca |
1099378 |
T |
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| Q |
100 |
caattttaactgggcaacctcaaatcaaatttatttgaacacacaagaaattgt |
153 |
Q |
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| T |
1099379 |
caattttaactgggcaacctcaaatcaaatttatttgaacacacaagaaattgt |
1099432 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 1099452 - 1099488
Alignment:
| Q |
173 |
ttatttactcacatcatttaattcctttctctttaaa |
209 |
Q |
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| T |
1099452 |
ttatttactcacatcatttaattcttttctctttaaa |
1099488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 40389401 - 40389429
Alignment:
| Q |
114 |
caacctcaaatcaaatttatttgaacaca |
142 |
Q |
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| T |
40389401 |
caacctcaaatcaaatttatttgaacaca |
40389429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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