View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_high_6 (Length: 453)
Name: NF13275_high_6
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 44799063 - 44798760
Alignment:
| Q |
1 |
tgaagagtaactaacccaaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaa |
100 |
Q |
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| T |
44799063 |
tgaagagtaactaacccaaacacgaaccattttcatatcatctctatactcaatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaa |
44798964 |
T |
|
| Q |
101 |
agaagatcagcagaagcaaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44798963 |
agaagatcagcagaagcaaaagaaacaacactgccaagatcaataccaacgtggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaatt |
44798864 |
T |
|
| Q |
201 |
caaccgcaaagtaagaatcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgcc |
300 |
Q |
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| T |
44798863 |
caaccgcaaagtaagaatcttgatcagaatgaggaaggcccatgtaaccattagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgcc |
44798764 |
T |
|
| Q |
301 |
atcg |
304 |
Q |
| |
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|||| |
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| T |
44798763 |
atcg |
44798760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 366 - 432
Target Start/End: Complemental strand, 44798698 - 44798632
Alignment:
| Q |
366 |
cggttgagttagttaaaggatcaagaaaacgaacaggatagaggtagaaagctcttccaattccaga |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44798698 |
cggttgagttagttaaaggatcaagaaaacgaacaggatagaggtagaaagctcttccaattccaga |
44798632 |
T |
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