View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_high_8 (Length: 375)
Name: NF13275_high_8
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 41864850 - 41864690
Alignment:
| Q |
25 |
attaatggcataaagtggaatcaaatgaagttgaatggcggggctaaggagcacaaagaagagtgggtttgaataatttgtttacgaagaaacacaagct |
124 |
Q |
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| T |
41864850 |
attaatagcataaagtggaaacaaatgaagttgaatggcggggctaaggagcacaaaaaagagaggggctgaataatttgtttacgaagaaacacaagct |
41864751 |
T |
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| Q |
125 |
tggagccaccaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag |
185 |
Q |
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| T |
41864750 |
tggaaccaccaacttgaaccatccccttttggaagcaatatagttgagttcatttattgag |
41864690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 224 - 366
Target Start/End: Complemental strand, 41864624 - 41864482
Alignment:
| Q |
224 |
ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctctttgcatcggtttgttttgttttctcaagaattttctccttacatgttt |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41864624 |
ataaagaacccttcgtatgaatgttaactcttcatatctgtgtgctttctgtttgtatcggtttgttttgttttctcaagaattttctccttacatgttt |
41864525 |
T |
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| Q |
324 |
tacattagtttattgtagcttttgtgataattcttcttcccct |
366 |
Q |
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| T |
41864524 |
tacattagttcattgtagcttttgtgataattcttcttcccct |
41864482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 26451950 - 26451987
Alignment:
| Q |
32 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
69 |
Q |
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| T |
26451950 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
26451987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 13861395 - 13861358
Alignment:
| Q |
32 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
69 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |
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| T |
13861395 |
gcataaagtggaaccaaatgaagttgaatggtggggct |
13861358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 52526691 - 52526654
Alignment:
| Q |
32 |
gcataaagtggaatcaaatgaagttgaatggcggggct |
69 |
Q |
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||||||||||||| ||||||||||||||||| |||||| |
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| T |
52526691 |
gcataaagtggaaccaaatgaagttgaatggtggggct |
52526654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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