View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_low_18 (Length: 237)
Name: NF13275_low_18
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28260960 - 28261178
Alignment:
| Q |
1 |
acttgttataacaaatatatcaataaatcagctattgcttcattctacaatatgtattgtccttcttgtattggagttgctcttttcattacttcaaatt |
100 |
Q |
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| T |
28260960 |
acttgttataacaaatatatcaataaatcagctattgcttcattctacaatatgtattgtccttcttgtattggagttgctcttttcattacttcaaatt |
28261059 |
T |
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| Q |
101 |
atgctcactataagaattaagatattcgacaatgatatttgagtaataaacgtacttgctgataaatcctagctagtagcaattaaagtattgattttat |
200 |
Q |
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| T |
28261060 |
atgctcactataagaattaagatattcgaaaatgatatttgagtaataaacgtacttgctgataaatcatagctagtagcaattaaagtattgattttat |
28261159 |
T |
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| Q |
201 |
attatccacaaagactctt |
219 |
Q |
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||||||||||||||||||| |
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| T |
28261160 |
attatccacaaagactctt |
28261178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 29929995 - 29930094
Alignment:
| Q |
8 |
ataacaaatatatcaataaatcagctattgcttcattctacaatatgtattgtccttctt-gtattggagttgctcttttcattacttcaaattatgctc |
106 |
Q |
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||||||||||||||||||||| | | | | ||||||||||| |||||| |||||||| ||||||||| |||| |||||||| | ||||||||||||| |
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| T |
29929995 |
ataacaaatatatcaataaataaacgagttactcattctacaagatgtatattccttcttagtattggagctgctattttcattgcatcaaattatgctc |
29930094 |
T |
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