View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13275_low_2 (Length: 712)
Name: NF13275_low_2
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 661; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 10 - 694
Target Start/End: Complemental strand, 37077345 - 37076661
Alignment:
| Q |
10 |
attatactaagaacaataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacataagaaaaaactccatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077345 |
attatactaagaacaataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacataagaaaaaactccatg |
37077246 |
T |
|
| Q |
110 |
ccaagtatccttgagttggttgatttatttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37077245 |
tcaagtatccttgagttggttgatttatttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagc |
37077146 |
T |
|
| Q |
210 |
cattggaaaatacactcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaacaaattgaacatt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
37077145 |
cattggaaaatacactcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtccattgaagagctcttccaaacaaattgaacatt |
37077046 |
T |
|
| Q |
310 |
gatctctagagtaacaagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccataa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37077045 |
gatctctagagtaacaagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccataa |
37076946 |
T |
|
| Q |
410 |
gcgtcacaactattttccaccaattatgaccttcatcgttatttgcgaccatctccttagcatgttttccaatatcgggcaggatttgttttaatgtgtc |
509 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37076945 |
gcgtcacaactatcttccaccaattatgaccttcatcgttatttgcgactatctccttagcatgttttccaatatcgggcaggatttgttttaatatgtc |
37076846 |
T |
|
| Q |
510 |
aggataaatagtcatatataagatgtaggcatccttatctaatgaaatttcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatg |
609 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076845 |
aggataaatagtcatatataagatgttggcatccttatctaatgaaatttcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatg |
37076746 |
T |
|
| Q |
610 |
gtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaaagt |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37076745 |
gtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaaagt |
37076661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 155 - 407
Target Start/End: Complemental strand, 37073441 - 37073189
Alignment:
| Q |
155 |
attgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaatacactcttcatgaaaaacatgcaaacatttggtc |
254 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37073441 |
attgcgacacaatggacataagagggatgattgatgactggagcaacttttgagccattggaaaatacattcttcatgaaaaacatgcaaacatttggtc |
37073342 |
T |
|
| Q |
255 |
ataacacattcagactctggtctattgaagagctcttccaaacaaattgaacattgatctctagagtaacaagatgagtgatccattccaacctttttca |
354 |
Q |
| |
|
||||||||||| |||| || || |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37073341 |
ataacacattctgactttgatccattgaagagctcttccaaacaaattgaacattgatccatagagtaacaagatgactgatccattccaacctttttca |
37073242 |
T |
|
| Q |
355 |
aatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccat |
407 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
37073241 |
aatcatccacagcaagtacagctttcacagcatcttcatcttcaatataccat |
37073189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 136 - 694
Target Start/End: Original strand, 37493287 - 37493889
Alignment:
| Q |
136 |
atttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaatacactcttcatgaaa |
235 |
Q |
| |
|
|||| |||||||||||| |||||||| |||||||||||| || |||||||||||||||| | | ||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
37493287 |
atttttaaaatatcacaatattgcgagacaatggacacatgacggatgattgatgactgaagcaacttttgaaccattggaaaatacagtctttatgaaa |
37493386 |
T |
|
| Q |
236 |
aacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaac--------aaattgaacattgatctctagagtaacaag |
327 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| || || |||||||||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
37493387 |
aacatgcaaacattttgtcataacacattgtgactttgatccattgaagagctcttccaaacaaattgaaaaattgaacattgagttgtagagtaacaag |
37493486 |
T |
|
| Q |
328 |
atgagtgatccattccaacctttttcaaatcatc---caaaacaagtacggctttcacagcatcatcatcttcaatataccat-----------aagcgt |
413 |
Q |
| |
|
|||||| ||||||||||| ||| |||| || | | || ||||||| | | || |||||| ||| |||||||||||||| |||||| |
|
|
| T |
37493487 |
atgagttatccattccaatgtttgtcaacccacctattataagaagtacgacgtccagagcatcttcagcttcaatataccatgtatagacagaaagcgt |
37493586 |
T |
|
| Q |
414 |
cacaactattttccaccaattatgaccttcatcgttatttgcgaccatctccttagcatgttttccaatatc-gggcaggatttgttttaatgtgtcagg |
512 |
Q |
| |
|
|||| |||| | ||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||||| | ||| |||||||||||| ||||||| |
|
|
| T |
37493587 |
cacatctatctcccacctattatgaccttcattgttgtttgcgaccatctccttagcatattttccaatatcttgacagaatttgttttaatatgtcagg |
37493686 |
T |
|
| Q |
513 |
ataaatagtcat---------------atataaga---tgtaggcatccttatctaa---tgaaatttcatcgcaattacataagatgtcacaaggaatc |
591 |
Q |
| |
|
| |||||| ||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37493687 |
agaaataggcatggaggaaaaagtgtaatataagaaagtgttggcatccttatctaacggtgtaatttcatcgcaattacataagatgtcacaaggaatc |
37493786 |
T |
|
| Q |
592 |
aatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaaaactaacttgaatgtaatagaacttaatgtaaa |
691 |
Q |
| |
|
|| ||||||| | ||| || ||| |||||| ||||| |||| |||| |||||||||||||||||||| ||| ||| ||||||| ||| |||||||||| |
|
|
| T |
37493787 |
aacaggatttgatacatcgtagtcttacaagtcgataatgagattgatgcattgagatgcaagggaaagttaaattggatgtaatggaaattaatgtaaa |
37493886 |
T |
|
| Q |
692 |
agt |
694 |
Q |
| |
|
||| |
|
|
| T |
37493887 |
agt |
37493889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 36904197 - 36904580
Alignment:
| Q |
10 |
attatactaagaacaataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcctgtcataaaaacataagaaaaaactccatg |
109 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||||||| |||| || | |||||||||||||||||||||| |||| | ||||||| |||| ||||| || |
|
|
| T |
36904197 |
attatactaagaaccccaaaaaacacatcataatactgtatacaaggtaggaaaagaaaatacacaatccagtcacaggaacataaaaaaatactccgtg |
36904296 |
T |
|
| Q |
110 |
ccaagt---atccttgagttggttgatttatttct-aaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatctttt |
205 |
Q |
| |
|
| || | |||||||||||||||||| ||| | |||||||| || ||||||||||||||||||| ||||||| ||||| |
|
|
| T |
36904297 |
cataggtacacccttgagttggttgattttttttttaaaatatcttatcattgcgacacaatggacacgtgagggat------------------ctttt |
36904378 |
T |
|
| Q |
206 |
gagccattggaaaatacactcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaacaaattgaa |
305 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
36904379 |
gaaccattggaaaatacactctttatgaaaaacatgcaaacattcagtcataacacattcagactttgatcctttgaagagctcttccaaacaaattgaa |
36904478 |
T |
|
| Q |
306 |
cattgatctctagagtaacaagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatatacc |
405 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
36904479 |
cattgatccatagagtaacaagatgactgatccattccaacctttttcaaatcatccatagcaagtacagctttcacagcatcttcatcttcaatatacc |
36904578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 559 - 694
Target Start/End: Original strand, 36904734 - 36904869
Alignment:
| Q |
559 |
tcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaa |
658 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||| | ||||||||||||||||||| || | |||||||||||||||||||||||| |||| |
|
|
| T |
36904734 |
tcatcacaattacataagatgtcacaaggaatagaaaagattcgattcatggtggtcctacaagcagaaaatgagtttgaggcattgagatgcaaaggaa |
36904833 |
T |
|
| Q |
659 |
aactaacttgaatgtaatagaacttaatgtaaaagt |
694 |
Q |
| |
|
|| ||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
36904834 |
aattaacttggatgtaatggaaattaatgtaaaagt |
36904869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 559 - 694
Target Start/End: Complemental strand, 37073041 - 37072906
Alignment:
| Q |
559 |
tcatcgcaattacataagatgtcacaaggaatcaatgggatttgcttcatggtggtcctacaagacgatactgagtttgaggcattgagatgcaagggaa |
658 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| || |||| | ||||||||||| ||||||| || | ||||||||||||||||||||||||||||| |
|
|
| T |
37073041 |
tcatcacaattacataagatgttacaaggaataaaaaagattcgattcatggtggtactacaagcagaaaatgagtttgaggcattgagatgcaagggaa |
37072942 |
T |
|
| Q |
659 |
aactaacttgaatgtaatagaacttaatgtaaaagt |
694 |
Q |
| |
|
|| ||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
37072941 |
aattaacttggatgtaatggaaattaatgtaaaagt |
37072906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 37493199 - 37493268
Alignment:
| Q |
10 |
attatactaagaacaataaaaaccacctcataatactatatataacggaggaaaagaaaatacacaatcc |
79 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
37493199 |
attatactaagaacattaaaaacaaccttataatactatgtataatgaaggaaaagaaaatacacaatcc |
37493268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 520
Target Start/End: Original strand, 36904617 - 36904695
Alignment:
| Q |
442 |
tcatcgttatttgcgaccatctccttagcatgttttccaatatcgggcaggatttgttttaatgtgtcaggataaatag |
520 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||| |||| |||||| |
|
|
| T |
36904617 |
tcatcgttacttgcgatcatctccttagcatattttccaatctcaagcaggatttgttttaatatgtgaggagaaatag |
36904695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 555 - 595
Target Start/End: Complemental strand, 36747001 - 36746961
Alignment:
| Q |
555 |
aatttcatcgcaattacataagatgtcacaaggaatcaatg |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36747001 |
aatttcatcgcaattacataagatgtcacaaggaatcaatg |
36746961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 448 - 520
Target Start/End: Complemental strand, 37073152 - 37073080
Alignment:
| Q |
448 |
ttatttgcgaccatctccttagcatgttttccaatatcgggcaggatttgttttaatgtgtcaggataaatag |
520 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| || ||||||||||||||||| ||| |||| |||||| |
|
|
| T |
37073152 |
ttatttgcgaccatctctttagcatattttccaatctcaagcaggatttgttttaatatgtgaggagaaatag |
37073080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 3e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 125 - 407
Target Start/End: Original strand, 41371338 - 41371620
Alignment:
| Q |
125 |
ttggttgatttatttctaaaatatcacattattgcgacacaatggacacaagagggatgattgatgactggaaaatcttttgagccattggaaaatacac |
224 |
Q |
| |
|
||||||||||| ||| | |||||| |||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||| ||||| ||| |
|
|
| T |
41371338 |
ttggttgatttgttttcataatatctgattattgcgacacaatggacacgagagtgatgattgacgacttatgcatcttttgagccattgaaaaatgcac |
41371437 |
T |
|
| Q |
225 |
tcttcatgaaaaacatgcaaacatttggtcataacacattcagactctggtctattgaagagctcttccaaacaaattgaacattgatctctagagtaac |
324 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||| |||| || || |||||||| |||||||||||| |||| ||||||||| || |||||| |
|
|
| T |
41371438 |
tctttatgaaaaacatgcaaacatttggtcataacatgttctgactttgatccattgaagaactcttccaaacatattgtacattgatcattatagtaac |
41371537 |
T |
|
| Q |
325 |
aagatgagtgatccattccaacctttttcaaatcatccaaaacaagtacggctttcacagcatcatcatcttcaatataccat |
407 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||||| |||||||| |||||||||| |||||| |||||||| ||||||| |
|
|
| T |
41371538 |
aagatgaatcatccattccaacctttttcaacctatccacaacaagtatggctttcacaacatcattatcttcaacataccat |
41371620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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