View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13275_low_4 (Length: 642)
Name: NF13275_low_4
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_low_4 |
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| [»] scaffold0996 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 36 - 640
Target Start/End: Original strand, 7855302 - 7855919
Alignment:
| Q |
36 |
ccaatcatggaatgcaatatgtgttttagagactctttagatcactcatga----caaataagattattattactc-accatggttctggaagctcaacc |
130 |
Q |
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| T |
7855302 |
ccaatcatggaatacaatatgtgttttagagactctttggatcactcatgcttggcaaataagattattattactccaccatggttctggaagctgaacc |
7855401 |
T |
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| Q |
131 |
ca--ggcttgctggtagctatcaatgtggcatatcaaacgaaatgcgtgttgtccgatttaaaattgaaaatctatatacgatgcacttgttgccaccaa |
228 |
Q |
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| T |
7855402 |
cataggcttgttggtagctatcaaggtggcatatcaaacgaaatgcgtgttgttcgatttgaaattgaaaatctatatacgatgcacttgttgccaccaa |
7855501 |
T |
|
| Q |
229 |
tatttcccaaaatgaatttggtgattctctcaatgtaagagtcttttgtcaaatagatttgattttatagtgtcctatattcgtaggcaagtaaataaga |
328 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||| ||||||||| ||||||| |
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| T |
7855502 |
tattccccaaaatgaatttggtgattctctcaatgtaagagtcttttg-caaatagatctgactttatagtgtcgtatatttgtaggcaagcaaataagg |
7855600 |
T |
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| Q |
329 |
tacatcataattttactagagcttccttatatcatcttagcttccatatttttaacattgtacctgctattttgcactctctaattataaacgaaatgac |
428 |
Q |
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|||||||| |||| |||||||||||||||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
7855601 |
aacatcatagttttgctagagcttccttatatcatattagctcccatatctttaacattgtagctgttattttgcactctctaattataaacgaaatgac |
7855700 |
T |
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| Q |
429 |
ttaactttgcctttagt-----nnnnnnnnnncatttgaattattcaacatttgtttttc--ctctctatttgccaagcatgaaaatagtgtttctaaaa |
521 |
Q |
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| T |
7855701 |
ttaacttcgcctttagtaaaaaaaaaaaaaaacatttgaattattcaacatttgtttttcctctctctatttgccaagcatgaaaatagtgtttctaaaa |
7855800 |
T |
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| Q |
522 |
tataacaataattcattttgtttactatatatccttctctatcaaatcaaaccacacacgtacagcatcgaatatgtgcgtctcaagacaaattgaacac |
621 |
Q |
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| T |
7855801 |
tataacaatagtttattttgtttactatatatccttctctatcaaatcaaaccacacacgtacagcatcgaatatgtgcgtctcaagacaaattgaacac |
7855900 |
T |
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| Q |
622 |
agttcttcatctcactcga |
640 |
Q |
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| T |
7855901 |
agttcttcatttcactcga |
7855919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0996 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0996
Description:
Target: scaffold0996; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 344 - 432
Target Start/End: Complemental strand, 1579 - 1491
Alignment:
| Q |
344 |
ctagagcttccttatatcatcttagcttccatatttttaacattgtacctgctattttgcactctctaattataaacgaaatgacttaa |
432 |
Q |
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| T |
1579 |
ctagagcttccttatgtcatcctagcccccatatttttaatgttgtaccttctactttgtactccttaattatgaatgaaatgacttaa |
1491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 33978213 - 33978131
Alignment:
| Q |
344 |
ctagagcttccttatatcatcttagcttccatatttttaacattgtacctgctattttgcactctctaattataaacgaaatg |
426 |
Q |
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| T |
33978213 |
ctagagcttccttatgtcatcctagcccccatatttttaatgttgtaccttctactttgtactccttaattatgaatgaaatg |
33978131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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