View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13275_low_7 (Length: 375)

Name: NF13275_low_7
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13275_low_7
NF13275_low_7
[»] chr6 (1 HSPs)
chr6 (1-358)||(380454-380819)
[»] chr7 (4 HSPs)
chr7 (1-358)||(6232157-6232523)
chr7 (8-159)||(48888137-48888289)
chr7 (54-155)||(19883466-19883566)
chr7 (42-113)||(44346472-44346543)
[»] chr4 (4 HSPs)
chr4 (1-175)||(55329100-55329275)
chr4 (55-159)||(18848060-18848163)
chr4 (40-113)||(55353552-55353625)
chr4 (40-159)||(42111003-42111121)
[»] chr8 (3 HSPs)
chr8 (1-156)||(42202639-42202795)
chr8 (59-159)||(44684481-44684580)
chr8 (66-145)||(25967835-25967913)
[»] chr2 (2 HSPs)
chr2 (1-124)||(38970998-38971123)
chr2 (65-112)||(16080467-16080514)
[»] chr5 (4 HSPs)
chr5 (1-159)||(3678230-3678388)
chr5 (53-154)||(2756301-2756401)
chr5 (65-159)||(3761009-3761102)
chr5 (66-157)||(42628995-42629085)
[»] chr3 (2 HSPs)
chr3 (70-159)||(51361293-51361381)
chr3 (81-125)||(48157382-48157426)
[»] scaffold0691 (1 HSPs)
scaffold0691 (40-159)||(1169-1287)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 380819 - 380454
Alignment:
Q  1 ggattttggtgaaatggtggaggatattaaggtgatttgg--gaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 98  Q
    ||||||||||||| |||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  380819 ggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 380720  T
Q  99 aaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctgtagttctgctgcac------ggc 192  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||      |||    
T  380719 aaccccaaggaatgcttattgagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgttgtagttctgctgcaccttttgggc 380620  T
Q  193 ttttgttttctgctatgccagttttctgttgttgctgtttttctgttatagctgccggttcaggggtttagttttggtttgggtgcaggttggctgtggt 292  Q
    | |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  380619 tattgttttctgctatgccagttttctgttgttgctatttttctgttatagttgccggttcaggggtttagttttgttttgggtgcaggttggctgtggt 380520  T
Q  293 tatcagcagtattacaaacttagtgcttttttctgttttggcgcttttgccgtcaccatgtatttg 358  Q
    ||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||||    
T  380519 tatcagcagtattacaacctttgtgcttttttctgtttaggtgcttttgccgtcaccatgtatttg 380454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 6232157 - 6232523
Alignment:
Q  1 ggattttggtgaaatggtggaggatattaaggtgatttgg--gaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 98  Q
    ||||||||||||| |||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232157 ggattttggtgaattggtggaggatattaaggtgatttcgtggaattgggctaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 6232256  T
Q  99 aaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctgtagttctgctgcac------ggc 192  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      |||    
T  6232257 aaccccaaggaatgcttattgagataatgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctttagttctgctgcactttttgggc 6232356  T
Q  193 ttttgttttctgctatgccagttttctg-ttgttgctgtttttctgttatagctgccggttcaggggtttagttttggtttgggtgcaggttggctgtgg 291  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6232357 ttttgttttctgctatgccagttttctgtttgttgcggtttttctggtatagctgccggttcaggggtttagttttggtttgggtgcaggttggctgtgg 6232456  T
Q  292 ttatcagcagtattacaaacttagtgcttttttctgttttggcgcttttgccgtcaccatgtatttg 358  Q
    |||||||||||||||||| ||||||||||||||||||||  |||||||||| |||||||||||||||    
T  6232457 ttatcagcagtattacaaccttagtgcttttttctgtttatgcgcttttgcagtcaccatgtatttg 6232523  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 48888137 - 48888289
Alignment:
Q  8 ggtgaaatggtggaggatattaaggtgattt--gggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaacccca 105  Q
    ||||||||||| || |||||||||||| | |   |||||||||  ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||    
T  48888137 ggtgaaatggttgatgatattaaggtgctctcgtggaattgggtgaattctagactaaagagtcctccttgcctctattacgagtggtgttggaacccca 48888236  T
Q  106 aggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg 159  Q
    |||||||  | || ||||   |||||| |||| |||||||||||||||||||||    
T  48888237 aggaatgtcttttgagat-tggtggggtagttctagaggtgtccgggacttttg 48888289  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 19883566 - 19883466
Alignment:
Q  54 tctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccggga 153  Q
    |||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||| |  ||||| ||||||||||||||||||||    
T  19883566 tctagactaaagagtcctccgtgcctctattacgagtggtgttggaaccccaaggaatgtttattgagat-agttggggtagttttagaggtgtccggga 19883468  T
Q  154 ct 155  Q
    ||    
T  19883467 ct 19883466  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 44346472 - 44346543
Alignment:
Q  42 aattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgc 113  Q
    |||||||| |||||||||||||  |||||||| ||||||| |||| ||||||||||||||||||| ||||||    
T  44346472 aattgggcgaattctagacttaaaagtcctccttgcctcttttacaagtggtgctggaaccccaaagaatgc 44346543  T

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Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 55329100 - 55329275
Alignment:
Q  1 ggattttggtgaaatggtggaggatattaaggtgatttggg--aattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 98  Q
    ||||||||||||||| |||||||| ||||||||||||| |   |||||  | ||||| ||||||| |||| |||| |||||||||||||||||||| |||    
T  55329100 ggattttggtgaaattgtggaggaaattaaggtgatttcgtgaaattgaacgaattcaagacttaagagttctccttgcctctattacgagtggtgttgg 55329199  T
Q  99 aaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttgtctgttgaggttgctg 175  Q
    |||| ||||||||||||||| |||| | |||||||||||||||||||||||| |||||||  |||||||||||||||    
T  55329200 aacctcaaggaatgcttattgagat-aggtggggcagttttagaggtgtccgtgactttttcctgttgaggttgctg 55329275  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 159
Target Start/End: Original strand, 18848060 - 18848163
Alignment:
Q  55 ctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggac 154  Q
    |||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||| |  ||||| |||||||||||||||||||||    
T  18848060 ctagacttaaaagtcctccctgcctctattacgagtggtgttggaaccccaaggaatgcctattgagat-agttggggtagttttagaggtgtccgggac 18848158  T
Q  155 ttttg 159  Q
    |||||    
T  18848159 ttttg 18848163  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 55353552 - 55353625
Alignment:
Q  40 ggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgc 113  Q
    |||||||||| ||||| |||||||  |||||||| ||||||| |||||| |||||||||||||||||| |||||    
T  55353552 ggaattgggcgaattccagacttaaaagtcctccttgcctcttttacgattggtgctggaaccccaagaaatgc 55353625  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 42111121 - 42111003
Alignment:
Q  40 ggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagtttt 139  Q
    |||||||||| | | | ||||||| ||||||||  ||||||| ||  |||||||| ||||||||||||||||||||  |  ||  | |||||| ||||||    
T  42111121 ggaattgggcgattacaagacttaagagtcctcactgcctcttttttgagtggtgttggaaccccaaggaatgcttgctccga-caggtggggtagtttt 42111023  T
Q  140 agaggtgtccgggacttttg 159  Q
    ||||||||||||||||||||    
T  42111022 agaggtgtccgggacttttg 42111003  T

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Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 42202639 - 42202795
Alignment:
Q  1 ggattttggtgaaatggtggaggatattaaggtgatttgg--gaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 98  Q
    ||||| ||||||||| || ||||| ||||||||||||| |  ||||||||  ||||||||||||| ||||||||| |||||||||||||||||||| |||    
T  42202639 ggattatggtgaaatagttgaggaaattaaggtgattttgtggaattgggtgaattctagacttaagagtcctccttgcctctattacgagtggtgttgg 42202738  T
Q  99 aaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggactt 156  Q
    ||||| |  ||||||||||| |||| |  ||||||||||||||||||||| |||||||    
T  42202739 aaccctatcgaatgcttattgagat-agatggggcagttttagaggtgtctgggactt 42202795  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 44684481 - 44684580
Alignment:
Q  59 acttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggactttt 158  Q
    ||||| ||||||||| ||||||| ||| |||||||| ||||||||||||||||||||  |  ||  | |||||| ||||||||||||||| |||||||||    
T  44684481 acttaagagtcctccctgcctcttttatgagtggtgttggaaccccaaggaatgcttgctccga-caggtggggtagttttagaggtgtctgggactttt 44684579  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 25967913 - 25967835
Alignment:
Q  66 agtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggt 145  Q
    |||||||| ||||||| |||||||||| ||||||||||||| || || || |||||||| || |||||||||||||||||    
T  25967913 agtcctccttgcctcttttacgagtggagctggaaccccaaagagtgtttgttaagatagcg-ggggcagttttagaggt 25967835  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 38970998 - 38971123
Alignment:
Q  1 ggattttggtgaaatggtggaggatattaaggtgatttgg--gaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 98  Q
    ||||||||||||||| |||||||| ||||||||||||| |  ||||||||| |||||||||||||  |||||||  |||||||||||||||||||| |||    
T  38970998 ggattttggtgaaattgtggaggaaattaaggtgatttcgtggaattgggcaaattctagacttaaaagtcctcattgcctctattacgagtggtgttgg 38971097  T
Q  99 aaccccaaggaatgcttattaagata 124  Q
    |||||||| ||||||||||| |||||    
T  38971098 aaccccaaagaatgcttattgagata 38971123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 16080467 - 16080514
Alignment:
Q  65 gagtcctccatgcctctattacgagtggtgctggaaccccaaggaatg 112  Q
    ||||||||| ||||||| ||| |||||||| |||||||||||||||||    
T  16080467 gagtcctccttgcctcttttatgagtggtgttggaaccccaaggaatg 16080514  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3678388 - 3678230
Alignment:
Q  1 ggattttggtgaaatggtggaggatattaaggtgatttgg--gaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctgg 98  Q
    ||||||||||||||| || ||||| ||||||||||||| |  ||||||||  | | ||||||||| ||||||||| |||||||||||| ||| ||| |||    
T  3678388 ggattttggtgaaattgttgaggagattaaggtgatttcgtggaattgggtgattactagacttaagagtcctccttgcctctattacaagttgtgttgg 3678289  T
Q  99 aaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg 159  Q
    |||||||  |||||||||||||||||  |  |||||||||||||||||||| |||||||||    
T  3678288 aaccccatcgaatgcttattaagata--ggtgggcagttttagaggtgtcctggacttttg 3678230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 2756401 - 2756301
Alignment:
Q  53 ttctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccggg 152  Q
    ||||||||| | ||| ||||| ||||| |||||||||||||| |||||||||||| |||| ||| | |||| |  ||||| ||||||||||| |||||||    
T  2756401 ttctagactaaagaggcctccgtgcctttattacgagtggtgttggaaccccaagaaatgtttactgagat-agttggggtagttttagaggcgtccggg 2756303  T
Q  153 ac 154  Q
    ||    
T  2756302 ac 2756301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 3761102 - 3761009
Alignment:
Q  65 gagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg 159  Q
    |||| |||| ||||||||||||||||| || | ||||||||||||||| ||| | | ||| | ||||| ||||||||||||||  ||||||||||    
T  3761102 gagttctccctgcctctattacgagtgctgtttgaaccccaaggaatgtttactgatatagc-tggggtagttttagaggtgtttgggacttttg 3761009  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 42629085 - 42628995
Alignment:
Q  66 agtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttt 157  Q
    |||||||| ||||||||||| ||||||||  ||||||||||||||||  |  | |||| |  ||||| ||||||||||| ||||||||||||    
T  42629085 agtcctccctgcctctattatgagtggtgtcggaaccccaaggaatgtcttctgagat-agttggggtagttttagaggcgtccgggacttt 42628995  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 51361293 - 51361381
Alignment:
Q  70 ctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagttttagaggtgtccgggacttttg 159  Q
    |||| ||||||||||| |||||||| |||||||||||||||||| |||| |||| |  ||||| ||||||||||||||| ||||||||||    
T  51361293 ctccctgcctctattatgagtggtgttggaaccccaaggaatgcctattgagat-agttggggtagttttagaggtgtcagggacttttg 51361381  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 48157382 - 48157426
Alignment:
Q  81 tattacgagtggtgctggaaccccaaggaatgcttattaagataa 125  Q
    ||||||||||||||||||||| | |||||||| |||| |||||||    
T  48157382 tattacgagtggtgctggaactcaaaggaatgtttatcaagataa 48157426  T

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Target: scaffold0691 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 1169 - 1287
Alignment:
Q  40 ggaattgggccaattctagacttaggagtcctccatgcctctattacgagtggtgctggaaccccaaggaatgcttattaagataacgtggggcagtttt 139  Q
    |||||||||| | | | ||||||| ||||||||| ||||||| ||| |||||||| ||||| ||||||||||||||  |  ||  | |||||| ||||||    
T  1169 ggaattgggcgattacaagacttaagagtcctccctgcctcttttatgagtggtgttggaagcccaaggaatgcttgctccga-caggtggggtagtttt 1267  T
Q  140 agaggtgtccgggacttttg 159  Q
    ||||||||||||||||||||    
T  1268 agaggtgtccgggacttttg 1287  T

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