View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13275_low_9 (Length: 313)
Name: NF13275_low_9
Description: NF13275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13275_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 155 - 303
Target Start/End: Complemental strand, 31524578 - 31524430
Alignment:
| Q |
155 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31524578 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
31524479 |
T |
|
| Q |
255 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31524478 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
31524430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31524730 - 31524673
Alignment:
| Q |
1 |
ggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgctcgtctg |
58 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
|
|
| T |
31524730 |
ggtgctccaagggttgggaacaatgatacaatctacctagaagtcagacgcccgtctg |
31524673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 155 - 303
Target Start/End: Original strand, 33366922 - 33367070
Alignment:
| Q |
155 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33366922 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
33367021 |
T |
|
| Q |
255 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33367022 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
33367070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 33366771 - 33366821
Alignment:
| Q |
1 |
ggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgc |
51 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33366771 |
ggtgctccaagggttgggaacaatgatacactctacctagaagtcagacgc |
33366821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 155 - 303
Target Start/End: Complemental strand, 49194536 - 49194388
Alignment:
| Q |
155 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgacatcatttgaattgaaagaagcattttggcctttggcatttcgaattaagatgcgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49194536 |
aagtggaacaattgtagaagttgttgttttgtaagagttgttgatatcatttgaattgaaagaagcattttggcctttggcattttgaattaagatgcgt |
49194437 |
T |
|
| Q |
255 |
tgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49194436 |
cgtttggttctgttcttgcaatacaaatgattaaacatgtgtgcctatg |
49194388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 49194687 - 49194637
Alignment:
| Q |
1 |
ggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgc |
51 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
49194687 |
ggtgctccaagggttgggaacaatgatacattctacctagaagtcagacgc |
49194637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University