View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13276_high_1 (Length: 720)
Name: NF13276_high_1
Description: NF13276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13276_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 72 - 702
Target Start/End: Complemental strand, 44952647 - 44952020
Alignment:
| Q |
72 |
atttacatatttgaagtaaagtatcatctgtatgaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
171 |
Q |
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||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44952647 |
atttacatatttgaagtaaagtatcatctttgtcaaaatgtatgtgcgtcgagtcgtgtccaagtgagacgttatctaatctcgagcatgttataacact |
44952548 |
T |
|
| Q |
172 |
atacatatattagaatagtctaggcctacgaggggcgcaagacccgtgttaggaccaatgaacaaagtgaagtatgtgtgtgtaagtggtcatcatatct |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
44952547 |
atacatatattagaatagtctaggcctacgaggggcgcaagacccgtgttaggaccaatgaacaaagtgaagtatgtgtgtttaa-tggtcatcatatct |
44952449 |
T |
|
| Q |
272 |
tgacaaacctaagtgcggggaacacaaacacactagatgtggatctatttgttggatcacatgagaacaatgagaggggaattcctaagtgacataggca |
371 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44952448 |
tgacaaacctaagtgtggggaacacaaacacactagatgtggatctatttgttggatcacatgagaacaatgagaggggaattcctaagtgacataggca |
44952349 |
T |
|
| Q |
372 |
gtacttaattcacgatgtcagaagctaccatgcaacactcctatgttgttttgtgtgtcacatatatggacatcgatcgagtagagtgactacatgagtt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44952348 |
gtacttaattcacgatgtcagaagctaccatgcaac--tcctatgttgttttgtgtgtcacatatatggacatcgatcgagtagaatgactacatgagtt |
44952251 |
T |
|
| Q |
472 |
ttgattgcatctgtctctgaatgaacatctaccacattccttgacttttgtctgaagttagaaatgttaccaaaatgtgaaatagaagtatcaagtgaac |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44952250 |
ttgattgcatctgtctctgaatgaacatctaccacattccttgacttttgtctgaagttagaaatgttaccaaaatgtgaaatagaagtatcaagtgaac |
44952151 |
T |
|
| Q |
572 |
atgcgtgttcctaagtaaatgtgtatttgataaatgtgcaatatgtatatcttaaatgaatcttacttctctatacacgatgggtcctataacatacgac |
671 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44952150 |
atgcgtgtttctaagtaaatgtgtatttgataaatgtgcaatatgtatatcttaagtgaatcttacttctctatacacgatgggtcctataacatacgac |
44952051 |
T |
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| Q |
672 |
taccataaatcctttatttttatgtatactt |
702 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
44952050 |
taccataaatcatttatttttatgtatactt |
44952020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 44953458 - 44953379
Alignment:
| Q |
1 |
aagtctgtgattgtttagctttctaagtgaatatgtgactatattatgttgatgtgaattatttaagtgtaatttacata |
80 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44953458 |
aagtatgtgattgtttagctttctaagtgaatatgtgactatattatgttgatgtgaattctttaagtgtaatttacata |
44953379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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