View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13276_low_3 (Length: 412)
Name: NF13276_low_3
Description: NF13276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13276_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 38729300 - 38729683
Alignment:
| Q |
17 |
gtaacatggtaactatctgaaaagaatttatgttacaattgattttaattgtttaaggagtaagtttttaaggtaggaggtggctgcaatattaggttta |
116 |
Q |
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| T |
38729300 |
gtaacatggtaactatctgaaaagaatttatgttacaattgattttaattgtttaaggagtaagtttttaaggtaggaggtggctacaatattaggttta |
38729399 |
T |
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| Q |
117 |
ggtcagaaaatttgagagacttgggaaccaactggtcatggctgtctgctcttaattggtgtaccaactaccacctattttaagaaccgtgtcaccgtgt |
216 |
Q |
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| T |
38729400 |
ggtcagaaaatttgagagacttgggaaccaactggtcatggctgtctgctcttaattggtgtaccaactaccacctattttaagaaccgtgtcaccgtgt |
38729499 |
T |
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| Q |
217 |
ggtctttctttctaaatgaaaaagttgctatttgcacctcaaaaattgatgaatctcagtgttagttacgcgtatggtataagttgactgtttgaaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38729500 |
ggtctttctttctaaatgaaaaagttgctatttgcacctccaaaattgatgaatctcagtgttagttacgcgtatggtataagttgactgtttgaaatta |
38729599 |
T |
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| Q |
317 |
aatgtttgactcagtttactgtaagcttgtgtactttacagctccgcgcggnnnnnnnctattatagaaagtttttacgatatt |
400 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38729600 |
aatgtttgactcagtttactgaatgcttgtgtactttacagctccgcgcggtttttttctattatagaaagtttttacgatatt |
38729683 |
T |
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