View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13276_low_4 (Length: 341)
Name: NF13276_low_4
Description: NF13276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13276_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 327
Target Start/End: Complemental strand, 33213860 - 33213547
Alignment:
| Q |
13 |
aatatccaatacttttaatatgtgccnnnnnnnngttaagagtaagatgcggtagaggcagcgtttggatgaaggtaactgatgctcacaaaaagttaag |
112 |
Q |
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| T |
33213860 |
aatatccaatacttttaatatgtgccaaaaaaaagttaagagtaagatgcggtagaggcagcgtttggatgaaggtaactgatgctca-aaaaagttaag |
33213762 |
T |
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| Q |
113 |
caaggaatcgtaggaaagtgattgaacaaacagtgtcttttgaaaagccaaattttcatgcggttgggaaaatactgacaacaaagaaaaattattttta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33213761 |
caaggaatcgtaggaaagtgattgaacaaacagtgtcttttgaaaagccaaattttcatgcggttgggaaaatactgacaacaaagaaaaattattttta |
33213662 |
T |
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| Q |
213 |
ccaacaaaaaagattgtcgtagatttattattagctcttcgtacgttggttttgtttggactcattggggaaaattataaaataaataaagaaaaatgaa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33213661 |
ccaacaaaaaagattgtcgtagatttattattagctcttcgtacgttggttttgtttggactcattggggaaaattataaattaaataaagaaaaatgaa |
33213562 |
T |
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| Q |
313 |
ttctgacaagaaaat |
327 |
Q |
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||||||||||||||| |
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| T |
33213561 |
ttctgacaagaaaat |
33213547 |
T |
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