View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13277_high_11 (Length: 209)

Name: NF13277_high_11
Description: NF13277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13277_high_11
NF13277_high_11
[»] chr6 (48 HSPs)
chr6 (1-209)||(25484329-25484537)
chr6 (1-209)||(26144138-26144346)
chr6 (4-209)||(25512164-25512369)
chr6 (5-209)||(25580996-25581200)
chr6 (4-209)||(26057195-26057400)
chr6 (4-209)||(26077165-26077370)
chr6 (4-209)||(27215725-27215930)
chr6 (1-126)||(25539813-25539938)
chr6 (8-207)||(27426318-27426517)
chr6 (4-207)||(27530010-27530213)
chr6 (32-209)||(31285860-31286037)
chr6 (41-163)||(26862890-26863012)
chr6 (8-162)||(27609871-27610025)
chr6 (8-162)||(27697337-27697491)
chr6 (24-162)||(27680243-27680381)
chr6 (24-173)||(26624564-26624713)
chr6 (24-173)||(26730541-26730690)
chr6 (24-164)||(27705003-27705143)
chr6 (24-162)||(25492070-25492208)
chr6 (24-162)||(26647772-26647910)
chr6 (24-162)||(26753740-26753878)
chr6 (27-172)||(26803742-26803887)
chr6 (32-209)||(26885368-26885545)
chr6 (40-160)||(27717252-27717372)
chr6 (8-167)||(28787515-28787674)
chr6 (8-167)||(28793636-28793795)
chr6 (40-207)||(27591727-27591894)
chr6 (8-167)||(27603450-27603609)
chr6 (32-162)||(26657263-26657393)
chr6 (32-162)||(26763234-26763364)
chr6 (7-164)||(29842741-29842898)
chr6 (40-162)||(27676371-27676493)
chr6 (85-161)||(26825173-26825249)
chr6 (72-167)||(27663960-27664055)
chr6 (62-164)||(29827317-29827419)
chr6 (41-156)||(28240667-28240778)
chr6 (72-161)||(26636987-26637076)
chr6 (72-161)||(26742953-26743042)
chr6 (62-159)||(28326809-28326906)
chr6 (62-159)||(28504445-28504542)
chr6 (43-114)||(26951055-26951126)
chr6 (85-162)||(2186180-2186257)
chr6 (72-113)||(26960466-26960507)
chr6 (85-162)||(28244149-28244226)
chr6 (85-162)||(28296491-28296568)
chr6 (85-162)||(28515505-28515582)
chr6 (75-151)||(26978724-26978800)
chr6 (128-164)||(28097192-28097228)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-207)||(60846-61045)
[»] chr4 (7 HSPs)
chr4 (8-207)||(18075038-18075237)
chr4 (40-181)||(18688354-18688495)
chr4 (40-162)||(18698147-18698269)
chr4 (40-162)||(18730251-18730373)
chr4 (40-162)||(18678307-18678429)
chr4 (40-162)||(18654224-18654346)
chr4 (72-162)||(18722832-18722922)
[»] chr1 (5 HSPs)
chr1 (24-162)||(267091-267229)
chr1 (24-209)||(28126379-28126564)
chr1 (24-209)||(28132205-28132390)
chr1 (72-206)||(26137229-26137363)
chr1 (92-162)||(5922220-5922290)
[»] scaffold1870 (1 HSPs)
scaffold1870 (8-173)||(46-211)
[»] scaffold0277 (2 HSPs)
scaffold0277 (8-173)||(12415-12580)
scaffold0277 (8-172)||(3453-3617)
[»] chr8 (2 HSPs)
chr8 (8-209)||(29272542-29272743)
chr8 (62-152)||(35984630-35984720)
[»] scaffold0419 (1 HSPs)
scaffold0419 (8-173)||(8764-8929)
[»] scaffold0349 (1 HSPs)
scaffold0349 (40-160)||(2292-2412)
[»] chr2 (1 HSPs)
chr2 (62-164)||(3280990-3281092)
[»] chr5 (1 HSPs)
chr5 (134-202)||(13717603-13717671)
[»] scaffold0038 (2 HSPs)
scaffold0038 (41-156)||(40829-40940)
scaffold0038 (85-162)||(44311-44388)
[»] scaffold0012 (1 HSPs)
scaffold0012 (98-162)||(211872-211936)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 48)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 25484329 - 25484537
Alignment:
Q  1 gggcaatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||    
T  25484329 gggcaatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagc 25484428  T
Q  101 tatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctc 200  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||| |  |||||||||||| | | |||||||||||||||    
T  25484429 tatgatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttacttcaaagggtataaatggacaaaagtaaaaaaaatacttcatgctc 25484528  T
Q  201 attatggcc 209  Q
    |||||||||    
T  25484529 attatggcc 25484537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 26144138 - 26144346
Alignment:
Q  1 gggcaatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagc 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| |||    
T  26144138 gggcaatttgtttggaaggaaggtagaagattgggagcgtacattagacgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagc 26144237  T
Q  101 tatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctc 200  Q
    |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || | | |||||||||||||||    
T  26144238 tatgatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttgcttcaaagggtgtgaatggacaaaggttaaaaaaatacttcatgctc 26144337  T
Q  201 attatggcc 209  Q
    |||||||||    
T  26144338 attatggcc 26144346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 25512164 - 25512369
Alignment:
Q  4 caatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctat 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  25512164 caatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagctat 25512263  T
Q  104 gatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcatt 203  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||| |  |||||||||||| | | ||||||||||||||||||    
T  25512264 gatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttacttcaaagggtataaatggacaaaagtaaaaaaaatacttcatgctcatt 25512363  T
Q  204 atggcc 209  Q
    ||||||    
T  25512364 atggcc 25512369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 209
Target Start/End: Original strand, 25580996 - 25581200
Alignment:
Q  5 aatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatg 104  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  25580996 aatttgtttggaaggaaggtagaagattggaagcgtatattagatgagtatgaaaatattcccaataaagatatccaaaggatacttcaagttagctatg 25581095  T
Q  105 atgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcatta 204  Q
    |||||||||||  ||||||  | |||||||||||||||||||||||||||||||||||||||  ||||||||| || | | |||||||||||||||||||    
T  25581096 atgctttggaaccaaaggagaagagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggttaaaaaaatacttcatgctcatta 25581195  T
Q  205 tggcc 209  Q
    |||||    
T  25581196 tggcc 25581200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 26057195 - 26057400
Alignment:
Q  4 caatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctat 103  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  26057195 caatttgattggaaggaaggtagaagattgggagcgtatattagacgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagctat 26057294  T
Q  104 gatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcatt 203  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| || | | ||||||||||||||||||    
T  26057295 gatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggttaaaaaaatacttcatgctcatt 26057394  T
Q  204 atggcc 209  Q
    ||||||    
T  26057395 atggcc 26057400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 26077165 - 26077370
Alignment:
Q  4 caatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctat 103  Q
    ||||||| ||||||||||||||||||||||| |||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| ||||||    
T  26077165 caatttgattggaaggaaggtagaagattgggagcgtatattagacgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagctat 26077264  T
Q  104 gatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcatt 203  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| || | | ||||||||||||||||||    
T  26077265 gatgctttgaaggaaaaggatcagagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggttaaaaaaatacttcatgctcatt 26077364  T
Q  204 atggcc 209  Q
    ||||||    
T  26077365 atggcc 26077370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 4 - 209
Target Start/End: Original strand, 27215725 - 27215930
Alignment:
Q  4 caatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctat 103  Q
    |||||||||||||||||  |||||||||||| | |||| ||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||    
T  27215725 caatttgtttggaaggagtgtagaagattgggaacgtatattagatgagtatgaaaagattcccaataaagagatccaaaggatacttaaagtcagctat 27215824  T
Q  104 gatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcatt 203  Q
    |||||| |||| ||||||||  | |||||||||||||||||||||||||||||||||||||||  ||||||||| |||| ||| ||||||||||| ||||    
T  27215825 gatgctctggaggaaaaggagaagagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggacaaaggtcaaagatatacttcatgcccatt 27215924  T
Q  204 atggcc 209  Q
    ||||||    
T  27215925 atggcc 27215930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 25539813 - 25539938
Alignment:
Q  1 gggcaatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| |||    
T  25539813 gggcaatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatgaaaatattcccgataaagatatccaaaggatacttcaagtaagc 25539912  T
Q  101 tatgatgctttggaagaaaaggatca 126  Q
    |||||||||||| | |||||||||||    
T  25539913 tatgatgctttgaaggaaaaggatca 25539938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 27426517 - 27426318
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| |||  ||||||| || |||  ||||||||||  |||| |||| |||||||||||||| |||||||| ||||||||||| |||||||||     
T  27426517 ttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatccaaagaatacttaaagtgagctatgatt 27426418  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatgg 207  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||  ||||  ||| |||| ||||||||||||||||||||||||    
T  27426417 ctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaaggttgtaaatgggaaaaggtcaaagaaatacttcatgctcattatgg 27426318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 27530213 - 27530010
Alignment:
Q  4 caatttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctat 103  Q
    ||||||| |||||||||  ||| ||||||  | | |||||||||||| |||| || | |||||||||||||| |||||||| ||||||||||| ||||||    
T  27530213 caatttggttggaaggagcgtacaagattcaatgagtacattagatgggtatgaagaaattcccaataaagagatccaaagaatacttaaagtgagctat 27530114  T
Q  104 gatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcatt 203  Q
    ||| |||||||  || | || ||||||||||||||||||||||||||||||||||||||||||  |||| || | |||| ||||||||||||||||||||    
T  27530113 gattctttggagaaagaagagcaaagtgtctttctagacattgcttgttgcttcaaagggtgtaaatggccagaggtcaaagaaatacttcatgctcatt 27530014  T
Q  204 atgg 207  Q
    ||||    
T  27530013 atgg 27530010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 31285860 - 31286037
Alignment:
Q  32 tggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtg 131  Q
    |||||| |||||||||||| |||| | || |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||| || ||||    
T  31285860 tggaagagtacattagatgggtatgacaagattcccaataaagagatccaaaagatacttaaagtaagctatgatgctttggaagaagaggagcagagtg 31285959  T
Q  132 tctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatggcc 209  Q
    ||||||| ||||||||||||||||||||||| || | |||| |  | |||| ||| ||||| ||||||||||||||||    
T  31285960 tctttctggacattgcttgttgcttcaaaggatgcggatgggcggatgtcaaagatatactccatgctcattatggcc 31286037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 26862890 - 26863012
Alignment:
Q  41 acattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctag 140  Q
    |||||||||| |||| |||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || | ||||||||||||||||    
T  26862890 acattagatgggtatgaaaagattcccaataaagagatccaaaggatacttaaagtaagctatgatgctttggaagaagagcagcaaagtgtctttctag 26862989  T
Q  141 acattgcttgttgcttcaaaggg 163  Q
    | ||||||||||| |||||||||    
T  26862990 atattgcttgttgtttcaaaggg 26863012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 27610025 - 27609871
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| |||  |||| || ||||||  ||||||||||| |||| | |  |||||||||||||| ||||||| |||||||||||| |||||||||     
T  27610025 ttgtttggaaagaacatagaggaatggaagtatacattagatgggtatgacaggattcccaataaagagatccaaaagatacttaaagtgagctatgatt 27609926  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  27609925 ctttggaagaagaggagcaaagtgtctttctggacattgcttgttgcttcaaagg 27609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 27697491 - 27697337
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| |||  ||||||| ||||||  || |||||||| |||| | |  |||||||||||||| ||||||| |||||||| ||| ||||||||||    
T  27697491 ttgtttggaaagaacatagaagaatggaagtatatattagatgggtatgacaggattcccaataaagagatccaaaagatacttagagtgagctatgatg 27697392  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    ||||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  27697391 ctttggaagaagaggagcaaagtgtctttctggacattgcttgttgcttcaaagg 27697337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 27680243 - 27680381
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||||||||||| ||||||||||| |||| | |  |||||||||||||| ||||||| ||||||||| || ||||||||||||||||||||| ||||    
T  27680243 tagaagattggaagcatacattagatgggtatgacaggattcccaataaagagatccaaaagatacttaaggtgagctatgatgctttggaagaagagga 27680342  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
     || ||||||||||| ||||| ||||| |||||||||||    
T  27680343 gcagagtgtctttcttgacatcgcttgctgcttcaaagg 27680381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 26624564 - 26624713
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| ||||||  ||||||||||| |||| | |  |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  26624564 tagaagaatggaagtatacattagatgggtatgacaggattcccaataaagagatccaaaagatacttaaagtgagctatgatgctttggaagaagagga 26624663  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgga 173  Q
     || |||||||||||||| |||||||||||||  ||||| |||| |||||    
T  26624664 gcagagtgtctttctagatattgcttgttgctcgaaaggatgtggatgga 26624713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 26730541 - 26730690
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| ||||||  ||||||||||| |||| | |  |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  26730541 tagaagaatggaagtatacattagatgggtatgacaggattcccaataaagagatccaaaagatacttaaagtgagctatgatgctttggaagaagagga 26730640  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgga 173  Q
     || |||||||||||||| |||||||||||||  ||||| |||| |||||    
T  26730641 gcagagtgtctttctagatattgcttgttgctcgaaaggatgtggatgga 26730690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 27705143 - 27705003
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| ||||||  ||||||||||| |||| | |  |||||||||||||| ||||||| |||||||| ||| ||||||||||||||||||||| ||||    
T  27705143 tagaagaatggaagaatacattagatgggtatgacaggattcccaataaagagatccaaaagatacttagagtgagctatgatgctttggaagaagagga 27705044  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagggt 164  Q
     || ||||||||||| ||||||||||||||||| |||||||    
T  27705043 gcagagtgtctttcttgacattgcttgttgcttaaaagggt 27705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 25492208 - 25492070
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| |||||| ||||||||||||||||| |||| |||  ||||||||| ||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  25492208 tagaagaatggaagtgtacattagatgagtatgaaaagattttcaataaagagatccaaaagatacttagagtgagctatgatgctttggaggaaaagga 25492109  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
     || ||| |||||||||||||  |||||| |||||||||    
T  25492108 gcagagtatctttctagacatgacttgtttcttcaaagg 25492070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 26647772 - 26647910
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||||||||| ||| || |    
T  26647772 tagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaagagca 26647871  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
     || |||||||||||||||||||||||||||||||||||    
T  26647872 gcagagtgtctttctagacattgcttgttgcttcaaagg 26647910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 26753740 - 26753878
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||||||||| ||| || |    
T  26753740 tagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaagagca 26753839  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
     || |||||||||||||||||||||||||||||||||||    
T  26753840 gcagagtgtctttctagacattgcttgttgcttcaaagg 26753878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 26803742 - 26803887
Alignment:
Q  27 aagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatca 126  Q
    |||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||||||||| ||| || | ||    
T  26803742 aagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatgctttggaggaagagcagca 26803841  T
Q  127 aagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgg 172  Q
     ||||||||||||||||||||||||||||||||||| |||| ||||    
T  26803842 gagtgtctttctagacattgcttgttgcttcaaaggatgtggatgg 26803887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 26885368 - 26885545
Alignment:
Q  32 tggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtg 131  Q
    |||||| ||||| ||||||  ||| |||| ||||| |||| | | ||||||  |||||||||||| |||||||||||||| || ||| |||| |||||||    
T  26885368 tggaagagtacactagatggatatgaaaagattcctaatacaaagatccaagagatacttaaagtaagctatgatgctttagaggaagaggagcaaagtg 26885467  T
Q  132 tctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatggcc 209  Q
    ||||||| || || |||||||||||||||||||||  ||||||| | |||  ||| ||||||||||||||||||||||    
T  26885468 tctttctggatatagcttgttgcttcaaagggtgtaaatggacagaggtcgaagatatacttcatgctcattatggcc 26885545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 27717372 - 27717252
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    ||||||||||| |||| | |  |||||||||||||| ||||||| |||||||||||| || |||||||||||||| ||| || | |||||||||||||||    
T  27717372 tacattagatgggtatgacaggattcccaataaagagatccaaaagatacttaaagtaagttatgatgctttggaggaagagcagcaaagtgtctttcta 27717273  T
Q  140 gacattgcttgttgcttcaaa 160  Q
    |||||||||||||||||||||    
T  27717272 gacattgcttgttgcttcaaa 27717252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 28787515 - 28787674
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| |||| |||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||    
T  28787515 ttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatg 28787614  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtg 167  Q
    ||||||| ||| || | |||||||| |||||||||||||| |||||||||||||| ||||    
T  28787615 ctttggaggaagagcaacaaagtgtttttctagacattgcatgttgcttcaaaggatgtg 28787674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 28793636 - 28793795
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| |||| |||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||    
T  28793636 ttgtttggaaagacgatagaagaatggaagggtactttagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatg 28793735  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtg 167  Q
    ||||||| ||| || | |||||||| |||||||||||||| |||||||||||||| ||||    
T  28793736 ctttggaggaagagcaacaaagtgtttttctagacattgcatgttgcttcaaaggatgtg 28793795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 207
Target Start/End: Complemental strand, 27591894 - 27591727
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| |||||  ||  |||||  ||||||||||||||| |||||||| | ||||||||||||||||||||||| |||| || ||||||||| |     
T  27591894 tacattagataagtatggaagaattccacataaagatatccaaaagatacttagactcagctatgatgctttggaagaagaggagcagagtgtctttttg 27591795  T
Q  140 gacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatgg 207  Q
    || |||||||||||| ||||||| |||  || |   ||||||| | | ||||||||||||||||||||    
T  27591794 gatattgcttgttgcatcaaaggatgtagattggagaaagtcaaacagatacttcatgctcattatgg 27591727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 27603609 - 27603450
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| |||| ||||| |  ||| | || |||||||||||| | |||||   ||| |||||||| ||||||||||    
T  27603609 ttgtttggaaagaggatagaagaatggaagggtacgttagaaggatatgagaagattcccaataaaaagatccacgagattcttaaagtaagctatgatg 27603510  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtg 167  Q
    ||||||| ||| || | || ||||||||||||||||||||||||||||||||||| ||||    
T  27603509 ctttggaggaagagcagcagagtgtctttctagacattgcttgttgcttcaaaggatgtg 27603450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 26657263 - 26657393
Alignment:
Q  32 tggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtg 131  Q
    |||||| ||||||||||||  ||| |||| |||||||||||| | || |||  |||||||||||| |||||||||| |||||| ||| |||| |||||||    
T  26657263 tggaagagtacattagatggatatgaaaagattcccaataaaaagattcaagagatacttaaagtaagctatgatgatttggaggaagaggagcaaagtg 26657362  T
Q  132 tctttctagacattgcttgttgcttcaaagg 162  Q
    ||||| |||| || |||||||  ||||||||    
T  26657363 tctttttagatatagcttgttttttcaaagg 26657393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 162
Target Start/End: Original strand, 26763234 - 26763364
Alignment:
Q  32 tggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtg 131  Q
    |||||| ||||||||||||  ||| |||| |||||||||||| | || |||  |||||||||||| |||||||||| |||||| ||| |||| |||||||    
T  26763234 tggaagagtacattagatggatatgaaaagattcccaataaaaagattcaagagatacttaaagtaagctatgatgatttggaggaagaggagcaaagtg 26763333  T
Q  132 tctttctagacattgcttgttgcttcaaagg 162  Q
    ||||| |||| || |||||||  ||||||||    
T  26763334 tctttttagatatagcttgttttttcaaagg 26763364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 29842898 - 29842741
Alignment:
Q  7 tttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgat 106  Q
    ||||||||||| |||  ||||||| |||||   ||||||||||  |||| |||  ||||| |||||||| ||||| |  ||||||||| | |||| ||||    
T  29842898 tttgtttggaaagaatatagaagaatggaaatctacattagataggtatgaaaggattcctaataaagagatccacaatatacttaaaataagctttgat 29842799  T
Q  107 gctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggt 164  Q
    |||||||| ||| | || ||| |||| ||||| |||||||||||||||||||||||||    
T  29842798 gctttggaggaagacgaacaaggtgtttttctcgacattgcttgttgcttcaaagggt 29842741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 27676493 - 27676371
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| |||||  ||  |||||  ||||||||||||||| |||||||| | | ||||||||||||||||| ||| |||| || ||||||||| |     
T  27676493 tacattagataagtatggaagaattccacataaagatatccaaaagatacttagactgagctatgatgctttggacgaagaggagcagagtgtctttttg 27676394  T
Q  140 gacattgcttgttgcttcaaagg 162  Q
    || |||||||||||| |||||||    
T  27676393 gatattgcttgttgcatcaaagg 27676371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 26825173 - 26825249
Alignment:
Q  85 gatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaag 161  Q
    |||||||| ||| ||||||||||||||||||||| || | |||||||| || || ||||||||||||||||||||||    
T  26825173 gatacttagagtaagctatgatgctttggaagaagagcaacaaagtgttttcctcgacattgcttgttgcttcaaag 26825249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 27664055 - 27663960
Alignment:
Q  72 aagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtg 167  Q
    |||||||||||| |||||||||||| |||| |||| ||||||||||| |  | || ||||||||| | || |||||||||||||||||||| ||||    
T  27664055 aagatatccaaaagatacttaaagtaagctttgatactttggaagaagaacaacagagtgtctttttggatattgcttgttgcttcaaaggatgtg 27663960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 29827317 - 29827419
Alignment:
Q  62 attcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaag 161  Q
    ||||| |||||||| |||||||  ||||||||| | || | |||||||||||| ||| | || ||| |||| ||||| ||||||||||||||||||||||    
T  29827317 attcctaataaagagatccaaaatatacttaaaataagttttgatgctttggaggaagatgaacaaggtgtttttctcgacattgcttgttgcttcaaag 29827416  T
Q  162 ggt 164  Q
    |||    
T  29827417 ggt 29827419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 28240667 - 28240778
Alignment:
Q  41 acattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctag 140  Q
    ||||||||  ||||| |||  ||||| |||||||| ||||||| ||||||||||||    | ||||||||||||  || | || |||||||| ||||| |    
T  28240667 acattagaccagtatgaaaggattccaaataaagagatccaaaagatacttaaagt----tttgatgctttggagaaagatgagcaaagtgtttttctcg 28240762  T
Q  141 acattgcttgttgctt 156  Q
    ||||||||||||||||    
T  28240763 acattgcttgttgctt 28240778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 26636987 - 26637076
Alignment:
Q  72 aagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaag 161  Q
    |||||||||||| ||| |||||||| |||||||| |||||||| ||| |  | || ||||||||| |||| |||||||||| ||| ||||    
T  26636987 aagatatccaaaagattcttaaagttagctatgacgctttggatgaagaacaacagagtgtctttttagatattgcttgtttctttaaag 26637076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 26742953 - 26743042
Alignment:
Q  72 aagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaag 161  Q
    |||||||||||| ||| |||||||| |||||||| |||||||| ||| |  | || ||||||||| |||| |||||||||| ||| ||||    
T  26742953 aagatatccaaaagattcttaaagttagctatgacgctttggatgaagaacaacagagtgtctttttagatattgcttgtttctttaaag 26743042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 28326809 - 28326906
Alignment:
Q  62 attcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaa 159  Q
    ||||||| |||| | ||||||  |||||||||||| |||| |||||||||||| ||| | || || | ||| ||||| ||||||||||| ||||||||    
T  28326809 attcccattaaaaagatccaagcgatacttaaagtaagctttgatgctttggatgaagatgagcagaatgtttttctcgacattgcttgctgcttcaa 28326906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 28504445 - 28504542
Alignment:
Q  62 attcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaa 159  Q
    ||||||| |||| | ||||||  |||||||||||| |||| |||||||||||| ||| | || || | ||| ||||| ||||||||||| ||||||||    
T  28504445 attcccattaaaaagatccaagcgatacttaaagtaagctttgatgctttggatgaagatgagcagaatgtttttctcgacattgcttgctgcttcaa 28504542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 26951055 - 26951126
Alignment:
Q  43 attagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttgga 114  Q
    ||||||| ||||| |||  |||||  || |||||||||||| |||||||||||| |||| ||||||||||||    
T  26951055 attagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagctttgatgctttgga 26951126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 2186180 - 2186257
Alignment:
Q  85 gatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    ||||||||||||||||| |||||||||| | ||  | ||| | ||| ||||||| |||||||||||||  ||||||||    
T  2186180 gatacttaaagtcagctttgatgctttgcaggaggaagataagagtctctttctcgacattgcttgttttttcaaagg 2186257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 26960466 - 26960507
Alignment:
Q  72 aagatatccaaaggatacttaaagtcagctatgatgctttgg 113  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  26960466 aagatatccaaaagatacttaaagtaagctatgacgctttgg 26960507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 28244149 - 28244226
Alignment:
Q  85 gatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    |||||||||||| |||| ||||||||||||  || | || || | ||| ||||| ||||||||||| |||||||||||    
T  28244149 gatacttaaagtaagctttgatgctttggagaaagatgagcagaatgtttttctcgacattgcttgctgcttcaaagg 28244226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 28296568 - 28296491
Alignment:
Q  85 gatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    |||||||||||| |||| |||||||||||| ||| | ||  ||| ||| ||||| ||||| ||||| |||||||||||    
T  28296568 gatacttaaagtaagctttgatgctttggaggaagatgagaaaaatgtttttcttgacatcgcttgctgcttcaaagg 28296491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 28515505 - 28515582
Alignment:
Q  85 gatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    |||||||||||| |||| |||||||||||| ||| | ||  ||| ||| ||||| ||||| ||||| |||||||||||    
T  28515505 gatacttaaagtaagctttgatgctttggaggaagatgagaaaaatgtttttcttgacatcgcttgctgcttcaaagg 28515582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 151
Target Start/End: Original strand, 26978724 - 26978800
Alignment:
Q  75 atatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgt 151  Q
    ||||||||| |||||||||||| |||| |||||||||||| ||| |  | || ||||||||| | || |||||||||    
T  26978724 atatccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacagagtgtctttttggatattgcttgt 26978800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 28097228 - 28097192
Alignment:
Q  128 agtgtctttctagacattgcttgttgcttcaaagggt 164  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  28097228 agtgtttttctcgacattgcttgttgcttcaaagggt 28097192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 60846 - 61045
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| |||  ||||||| || |||  ||||||||||  |||| |||| |||||||||||||| |||||||| ||||||||||| |||||||||     
T  60846 ttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatccaaagaatacttaaagtgagctatgatt 60945  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatgg 207  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||  ||||  ||| |||| ||||||||||||||||||||||||    
T  60946 ctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaaggttgtaaatgggaaaaggtcaaagaaatacttcatgctcattatgg 61045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 18075038 - 18075237
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| |||  ||||||| || |||  ||||||||||  |||| |||| |||||||||||||| |||||||| ||||||||||| |||||||||     
T  18075038 ttgtttggaaagaacatagaagaatgcaagaatacattagattggtatgaaaagattcccaataaagagatccaaagaatacttaaagtgagctatgatt 18075137  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatgg 207  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| |||  ||||  ||| |||| ||||||||||||||||||||||||    
T  18075138 ctttggaggaagaggagcaaagtgtctttctagacattgcttgttgcttcaaaggttgtaaatgggaaaaggtcaaagaaatacttcatgctcattatgg 18075237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 40 - 181
Target Start/End: Complemental strand, 18688495 - 18688354
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| |||||||||  ||||| ||  |||||||||||| |||||||||||| |||| |||||||||||| ||| |  | |||||||||||| |     
T  18688495 tacattagataagtatcaaagaattccaaacgaagatatccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaagtgtctttttg 18688396  T
Q  140 gacattgcttgttgcttcaaagggtgtgtatggacaaaagtc 181  Q
    || |||||||||| ||||||||| ||| ||| | ||||||||    
T  18688395 gatattgcttgtttcttcaaaggatgtatattggcaaaagtc 18688354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 18698269 - 18698147
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| ||||| |||  |||||  || |||||||||||| |||||||||||| |||| |||||||||||| ||| |  | |||||||||||| |     
T  18698269 tacattagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaagtgtctttttg 18698170  T
Q  140 gacattgcttgttgcttcaaagg 162  Q
    || |||||||||| |||||||||    
T  18698169 gatattgcttgtttcttcaaagg 18698147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 18730373 - 18730251
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| ||||| |||  |||||  || |||||||||||| |||||||||||| |||| |||||||||||| ||| |  | |||||||||||| |     
T  18730373 tacattagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaagtgtctttttg 18730274  T
Q  140 gacattgcttgttgcttcaaagg 162  Q
    || |||||||||| |||||||||    
T  18730273 gatattgcttgtttcttcaaagg 18730251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 18678429 - 18678307
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| ||||| |||  |||||  || |||||||||||| |||||||||||| |||| |||||||||||| ||| |  | |||| ||||||| |     
T  18678429 tacattagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagctttgatgctttggacgaagaacaacaaattgtctttttg 18678330  T
Q  140 gacattgcttgttgcttcaaagg 162  Q
    || |||||||||| |||||||||    
T  18678329 gatattgcttgtttcttcaaagg 18678307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 18654346 - 18654224
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    |||||||||| ||||| |||  |||||  || |||||||||||| |||||||||||| || | |||||||||||| ||| |  | |||||||||||| |     
T  18654346 tacattagataagtatgaaagaattccacatgaagatatccaaaagatacttaaagtaagttttgatgctttggatgaagaacaacaaagtgtctttttg 18654247  T
Q  140 gacattgcttgttgcttcaaagg 162  Q
    || ||||||||||  ||||||||    
T  18654246 gatattgcttgtttgttcaaagg 18654224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 18722922 - 18722832
Alignment:
Q  72 aagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    |||||||||||| |||||||||||| |||| |||||||||||  ||| |  | |||||||||||| | || |||||||||| |||||||||    
T  18722922 aagatatccaaaagatacttaaagtaagctttgatgctttgggcgaagaacaacaaagtgtctttttggatattgcttgtttcttcaaagg 18722832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 267229 - 267091
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| |||||| |||||||||||| |||| | || |||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||| ||||    
T  267229 tagaagaatggaagggtacattagatgggtatgataagattcccaataaagagatccaaaagatacttaaagtgagctatgatggtttggaagaagagga 267130  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
     || ||||||||| |||||||||||||||||||||||||    
T  267129 gcagagtgtctttttagacattgcttgttgcttcaaagg 267091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 28126564 - 28126379
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| |||||| ||||||||||||  ||| |||| ||||| |||||| | ||||||  |||| ||||| | ||||||||||||||||| ||| | ||    
T  28126564 tagaagaatggaagggtacattagatggatatgaaaagattccaaataaaaagatccaagagatatttaaactaagctatgatgctttggaggaagatga 28126465  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatggcc 209  Q
     |||||||||||||| || || ||||| ||||||||||||| |  || |||| | ||   | | ||||||||||||||||||||||    
T  28126464 gcaaagtgtctttctcgatatagcttgctgcttcaaagggtatagattgacagaggttgaaaagatacttcatgctcattatggcc 28126379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 28132390 - 28132205
Alignment:
Q  24 tagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaagga 123  Q
    ||||||| |||||| ||||||||||||  ||| |||| ||||| |||||| | |||||   |||| ||||||| || || ||||||||||| ||| ||||    
T  28132390 tagaagaatggaagtgtacattagatggatatgaaaagattcctaataaaaagatccatgagatatttaaagtaagttacgatgctttggaggaagagga 28132291  T
Q  124 tcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatggcc 209  Q
     |||||||||||||| || || |||||||||||||| |||| |  || |||||  |||  ||| ||||||||||||||| ||||||    
T  28132290 gcaaagtgtctttctggatatagcttgttgcttcaaggggtatagattgacaatggtcgaagagatacttcatgctcataatggcc 28132205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 26137229 - 26137363
Alignment:
Q  72 aagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatg 171  Q
    ||||||||||||  ||||||| ||| ||||||||||||||||| ||| |  | |||||||| ||| | || ||||||||||||||||||||||||  ||     
T  26137229 aagatatccaaaacatacttagagtaagctatgatgctttggacgaagaacaacaaagtgtatttttggatattgcttgttgcttcaaagggtgtaaatt 26137328  T
Q  172 gacaaaagtcagagaaatacttcatgctcattatg 206  Q
    |||| |||||  | | ||||||||||||| |||||    
T  26137329 gacagaagtccaaaagatacttcatgctcgttatg 26137363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 5922290 - 5922220
Alignment:
Q  92 aaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    ||||| |||| |||||||||||||||| | ||  ||||||| ||||| || ||||||||||||||||||||    
T  5922290 aaagtgagctttgatgctttggaagaagaagagaaaagtgtttttcttgatattgcttgttgcttcaaagg 5922220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 46 - 211
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||    
T  46 ttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatg 145  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgga 173  Q
    ||||||| ||| || | |||||||| |||||||||||||| |||||||||||||| |||| |||||    
T  146 ctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtggatgga 211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 12580 - 12415
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||    
T  12580 ttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagctatgatg 12481  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgga 173  Q
    ||||||| ||| || | |||||||| |||||||||||||| |||||||||||||| |||| |||||    
T  12480 ctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtggatgga 12415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 3617 - 3453
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| ||||||||||    
T  3617 ttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccaccagatacttaaagtaagctatgatg 3518  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgg 172  Q
    ||||||| ||| || | |||||||| |||||||||||||| |||||||||||||| |||| ||||    
T  3517 ctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtggatgg 3453  T

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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 29272743 - 29272542
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| ||||||||||||  ||| |||| ||||||||||||   |||||   |||||||||||| || |||||||    
T  29272743 ttgtttggaaagaggatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaggatccaccagatacttaaagtaagttatgatg 29272644  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcattatgg 207  Q
    ||||||||||| || | |||||||||||||| ||||||||||||||||||||||| |||| ||||  | | | || | | ||||||||| ||||||||||    
T  29272643 ctttggaagaagagcaacaaagtgtctttctggacattgcttgttgcttcaaaggttgtgaatgggaagatgccaaatatatacttcattctcattatgg 29272544  T
Q  208 cc 209  Q
    ||    
T  29272543 cc 29272542  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 35984630 - 35984720
Alignment:
Q  62 attcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgtt 152  Q
    ||||| |||||||| ||||||| |||||||||||| || | ||||||||| || ||| | || |||||||| ||||| |||||||||||||    
T  35984630 attcctaataaagacatccaaaagatacttaaagtaagttttgatgctttagaggaagatgagcaaagtgtttttcttgacattgcttgtt 35984720  T

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Target: scaffold0419 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 8764 - 8929
Alignment:
Q  8 ttgtttggaaggaaggtagaagattggaagcgtacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatg 107  Q
    |||||||||| || | ||||||| |||||| ||||||||||||  ||| |||| |||||||||||| | |||||   |||||||||||| || |||||||    
T  8764 ttgtttggaaagacgatagaagaatggaagggtacattagatggatatgaaaagattcccaataaaaagatccacgagatacttaaagtaagttatgatg 8863  T
Q  108 ctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagggtgtgtatgga 173  Q
    ||||||| ||| || | |||||||| |||||||||||||| |||||||||||||| |||| |||||    
T  8864 ctttggaggaagagcagcaaagtgtttttctagacattgcctgttgcttcaaaggatgtggatgga 8929  T

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Target: scaffold0349 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 2412 - 2292
Alignment:
Q  40 tacattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttcta 139  Q
    ||||||||||| |||| | |  |||||||||||||| ||||||| |||||||||||| || |||||||||||||| ||| || | |||||||||||||||    
T  2412 tacattagatgggtatgacaggattcccaataaagagatccaaaagatacttaaagtaagttatgatgctttggaggaagagcagcaaagtgtctttcta 2313  T
Q  140 gacattgcttgttgcttcaaa 160  Q
    |||||||||||||||||||||    
T  2312 gacattgcttgttgcttcaaa 2292  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 3280990 - 3281092
Alignment:
Q  62 attcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaag 161  Q
    ||||| |||||||| || || | |||||||||||| || | |||||||||||| ||| | || |||||||| ||||| ||||||||||||||||| ||||    
T  3280990 attcctaataaagagattcagaagatacttaaagtgagttttgatgctttggaggaagacgagcaaagtgtttttctcgacattgcttgttgctttaaag 3281089  T
Q  162 ggt 164  Q
    |||    
T  3281090 ggt 3281092  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 13717603 - 13717671
Alignment:
Q  134 tttctagacattgcttgttgcttcaaagggtgtgtatggacaaaagtcagagaaatacttcatgctcat 202  Q
    ||||| ||||||||||||||||||||||| | |  || |||||| |||| |||||||||||||||||||    
T  13717603 tttcttgacattgcttgttgcttcaaaggatataaatcgacaaaggtcaaagaaatacttcatgctcat 13717671  T

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Target: scaffold0038 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 156
Target Start/End: Original strand, 40829 - 40940
Alignment:
Q  41 acattagatgagtatcaaaatattcccaataaagatatccaaaggatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctag 140  Q
    ||||||||  ||||| |||  ||||| |||||||| ||||||| ||||||||||||    | ||||||||||||  || | || |||||||| ||||| |    
T  40829 acattagaccagtatgaaaggattccaaataaagagatccaaaagatacttaaagt----tttgatgctttggagaaagatgagcaaagtgtttttctcg 40924  T
Q  141 acattgcttgttgctt 156  Q
    ||||||||||||||||    
T  40925 acattgcttgttgctt 40940  T

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Target: scaffold0038; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 44311 - 44388
Alignment:
Q  85 gatacttaaagtcagctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    |||||||||||| |||| ||||||||||||  || | || || | ||| ||||| ||||||||||| |||||||||||    
T  44311 gatacttaaagtaagctttgatgctttggagaaagatgagcagaatgtttttctcgacattgcttgctgcttcaaagg 44388  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 211936 - 211872
Alignment:
Q  98 agctatgatgctttggaagaaaaggatcaaagtgtctttctagacattgcttgttgcttcaaagg 162  Q
    |||| |||||||||||| || || ||| ||  ||| ||||| |||||||||||||||||||||||    
T  211936 agctttgatgctttggaggacaaagataaatttgtttttcttgacattgcttgttgcttcaaagg 211872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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