View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13277_high_5 (Length: 253)
Name: NF13277_high_5
Description: NF13277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13277_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 35974293 - 35974062
Alignment:
| Q |
19 |
aacctacatattctcgagctttgtcaacctcattagcacacgacgaagccggaaacgttgtcgttacgctaccatcatttctatttccagaaataccctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35974293 |
aacctacatattctcgagctttgtcaacctcattagcacacgacgaagccggaaacgttgtcgttacgctaccatcatttctatttccagaaataccctc |
35974194 |
T |
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| Q |
119 |
ccctgcgtgtgcagtatttttaggacacagaaagaagtttcttgatccaagtttcactagtttctcctctctattcaaacctacacatcacaaaaaccaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
35974193 |
ccctgcgtgtgcagtatttttaggacacagaaagaagtttcttgatccaagtttcactagtttctcctccctgttcaaacctacgcatcacaaaaaccaa |
35974094 |
T |
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| Q |
219 |
attaatcaaaacccttattaatcaaaatcaaatta |
253 |
Q |
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|||||||| ||||||||||||||||||||||| |
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| T |
35974093 |
--caatcaaaa-ccttattaatcaaaatcaaatta |
35974062 |
T |
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