View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13277_low_10 (Length: 223)
Name: NF13277_low_10
Description: NF13277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13277_low_10 |
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| [»] scaffold0549 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 12635513 - 12635303
Alignment:
| Q |
1 |
agtttctaattctgggccttcaaatgcatcaaaatacctatgaacaagtgaattcatatcaatgctgcttgcaatattggtaccatcttccgcgttttcg |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12635513 |
agtttctaattctgggccttcaaatgtatcaaaatacctatgaacaagtaaattcatatcaatgctgcttgcaatattggtaccatcttccgcgttt-cg |
12635415 |
T |
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| Q |
101 |
actggttgtataccgcttagaatcgacaattgtttcttgagtcaaccagaccatgttttaaacgagtcgtatctcttatcttgaaatttttcttgatcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12635414 |
actggttgtataccgcttagaatcgacaattgtttcttgagtcaaccagaccatgttttaaacgagtcgtatcttttatcttgaaatttttcttgatcag |
12635315 |
T |
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| Q |
201 |
aatttcctgatg |
212 |
Q |
| |
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|||||||||||| |
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| T |
12635314 |
aatttcctgatg |
12635303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 11364256 - 11364076
Alignment:
| Q |
1 |
agtttctaattctgggccttcaaatgcatcaaaatacctatgaacaagtgaattcatatcaatgctgcttgcaatattggtaccatcttccgcgttttcg |
100 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||| |||| || || | |||||| ||| |||| | | ||| ||||||||| | ||| | |
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| T |
11364256 |
agtttctaattctggaccttccaatgcatcaaaatacctatcaacaggtaaaggcctatcaaagcttcttggagtgttgttaccatcttgtgtatttcct |
11364157 |
T |
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| Q |
101 |
actggttgtataccgcttagaatcgacaattgtttcttgagtcaaccagaccatgttttaaacgagtcgtatctcttatct |
181 |
Q |
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| T |
11364156 |
atcggttcttttccacgtagaatcgataattgtctctcgagtccaccagaccaagttttaaacgagtcgaatgtcttatct |
11364076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11341333 - 11341288
Alignment:
| Q |
1 |
agtttctaattctgggccttcaaatgcatcaaaatacctatgaaca |
46 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
11341333 |
agtttctaattctggaccttccaatgcatcaaaatacctatcaaca |
11341288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0549
Description:
Target: scaffold0549; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2432 - 2387
Alignment:
| Q |
1 |
agtttctaattctgggccttcaaatgcatcaaaatacctatgaaca |
46 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
2432 |
agtttctaattctggaccttccaatgcatcaaaatacctatcaaca |
2387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0549; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4522 - 4477
Alignment:
| Q |
1 |
agtttctaattctgggccttcaaatgcatcaaaatacctatgaaca |
46 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
4522 |
agtttctaattctggaccttccaatgcatcaaaatacctatcaaca |
4477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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