View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13277_low_2 (Length: 483)
Name: NF13277_low_2
Description: NF13277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13277_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 37579303 - 37579483
Alignment:
| Q |
23 |
caacaacggtagcatctgctgaaggtggtgttattccccaaagaccaattttctcctggtgttctattatttctcctttaggaaggggacctggaatcta |
122 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37579303 |
caacaacggttgcatctgctgaaggtagtgttattccccaaagaccaattttcttctggcgttctattatttctcctttaggaaggggacctggaatcta |
37579402 |
T |
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| Q |
123 |
caaacatgcatgattcattaacattgggaaaattacagagtatatgaaatatattaaaaggaagaaattaaaaagtaatac |
203 |
Q |
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|||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37579403 |
caaacatgcatgattcgttaaaattgggaaatttacagagtatatgaaatatattaaaaggaagaaattaaaaagtaatac |
37579483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 266 - 415
Target Start/End: Original strand, 37580451 - 37580602
Alignment:
| Q |
266 |
atcataaggtaagaccactgtattatgctgctaaatatctctacaaat--ttacatgatgagatatgatttgatacacatataaaagacagttatacact |
363 |
Q |
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||||||||||||| ||||| ||||||||| || |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
37580451 |
atcataaggtaaggccactttattatgctcctttatatctctacaaatatttacacgatgagatatgatttgatatacatataaaagacagttttacact |
37580550 |
T |
|
| Q |
364 |
gattgagtatatacaaattaaatcccctacactaaattcaatcaaataaacc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
37580551 |
gattgagtatatacaaattaaatcccctacactaaattcaatcgagtaaacc |
37580602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 211 - 325
Target Start/End: Complemental strand, 34261964 - 34261850
Alignment:
| Q |
211 |
cagaaactagcagtttgttcactgacaatgtgaaatactgttttatgcatacattatcataaggtaagaccactgtattatgctgctaaatatctctaca |
310 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34261964 |
cagaaagtagcagtttgttcactgacaatgtgaaatcctgttttatgcatacattatcataaggtaagaccactgtattatgctcctaaatatctctaca |
34261865 |
T |
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| Q |
311 |
aatttacatgatgag |
325 |
Q |
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||||||||||||||| |
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| T |
34261864 |
aatttacatgatgag |
34261850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 27218387 - 27218559
Alignment:
| Q |
23 |
caacaacggtagcatctgctgaaggtggtgttattccccaaagaccaattttctcctggtgttctattatttctcctttaggaaggggacctggaatcta |
122 |
Q |
| |
|
|||||||||| |||| |||||||||| |||||||||||||||| |||||||||| || |||||||| ||||| | ||||||||||||||||||||||||| |
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| T |
27218387 |
caacaacggttgcatttgctgaaggtagtgttattccccaaaggccaattttcttcttgtgttctaatatttgttctttaggaaggggacctggaatcta |
27218486 |
T |
|
| Q |
123 |
caaacatgcatgattcatt-aacattgggaaaattacagagtatatgaaatatattaaaaggaagaaattaaa |
194 |
Q |
| |
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|||||||| |||||| || || ||| |||||||| ||| |||| ||||||||||||| ||| ||| |||| |
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| T |
27218487 |
caaacatgtatgattatttaaaaattcacaaaattacggaggatataaaatatattaaaaagaaaaaagtaaa |
27218559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 27211411 - 27211525
Alignment:
| Q |
23 |
caacaacggtagcatctgctgaaggtggtgttattccccaaagaccaattttctcctggtgttctattatttctcctttaggaaggggacctggaatcta |
122 |
Q |
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||||||| || ||||||||||||||| ||||||||| |||||| |||||||||| || ||||||||||||| | ||||||||||||||||||||||||| |
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| T |
27211411 |
caacaacagttgcatctgctgaaggtagtgttattctccaaaggccaattttcttctcttgttctattatttgttctttaggaaggggacctggaatcta |
27211510 |
T |
|
| Q |
123 |
caaacatgcatgatt |
137 |
Q |
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|||||||| |||||| |
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| T |
27211511 |
caaacatgtatgatt |
27211525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 34261849 - 34261784
Alignment:
| Q |
350 |
gacagttatacactgattgagtatatacaaattaaatcccctacactaaattcaatcaaataaacc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34261849 |
gacagttatacactgattgagtatatacaaattaaatcccctacactaaattcaatcaagtaaacc |
34261784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 34262063 - 34262014
Alignment:
| Q |
159 |
agagtatatgaaatatattaaaaggaagaaattaaaaagtaatacaaggt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34262063 |
agagtatatgaaatatattaaaaggaagaaattaaaaagtaatacaaggt |
34262014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 280 - 405
Target Start/End: Original strand, 27217025 - 27217151
Alignment:
| Q |
280 |
ccactgtattatgctgctaaatatctctacaaat--ttacatgatgagatatgatttgatacacatataaaagacagttatacactgattgagtatatac |
377 |
Q |
| |
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||||| ||||||| | ||||||||||| |||||| |||||||||||||||| ||| || |||| ||| |||||| ||||||||| |||||| ||| |
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| T |
27217025 |
ccactttattatgttcctaaatatctccacaaatatttacatgatgagatattattcaatgtacattgtaaatacagttttacactgatcgagtatgtac |
27217124 |
T |
|
| Q |
378 |
aaattaaatcccctacactaaattcaat |
405 |
Q |
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||||||||| || ||||||||||||||| |
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| T |
27217125 |
aaattaaat-ccttacactaaattcaat |
27217151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 27219690 - 27219799
Alignment:
| Q |
296 |
ctaaatatctctacaaat--ttacatgatgagatatgatttgatacacatataaaagacagttatacactgattgagtatatacaaattaaatcccctac |
393 |
Q |
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|||||||||| ||||||| |||||||||||||||| ||| || |||||| || | |||| ||||||| |||||||| |||||||||||| || ||| |
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| T |
27219690 |
ctaaatatctttacaaatatttacatgatgagatattattcaatgtacatatttaatagagttttacactg-ttgagtatgtacaaattaaat-ccttac |
27219787 |
T |
|
| Q |
394 |
actaaattcaat |
405 |
Q |
| |
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|||||||||||| |
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|
| T |
27219788 |
actaaattcaat |
27219799 |
T |
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