View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13277_low_9 (Length: 235)
Name: NF13277_low_9
Description: NF13277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13277_low_9 |
 | |
|
| [»] scaffold0262 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 50 - 220
Target Start/End: Original strand, 12635943 - 12636109
Alignment:
| Q |
50 |
ttgttggagcgttacttggtactttttcatgggtcaaatatgttaaacatccaagtctaattgaagtggaattgaatgctatgaagaatgagtatgatgt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12635943 |
ttgttggagcgttacttggtactttttcatgggtcaaatatgttaaacatccaagtctaattgaagtggaattgagtgctatgaagaatgagtatgatgt |
12636042 |
T |
|
| Q |
150 |
gagctatttaactaccaccttgaggacaaggtgtttgtgtaagaccaatggaatgtaatgactcgagatag |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12636043 |
gagctatt----taccaccttgaggacaaggtgtttgtgtaagaccaatggaatgtaatgactcgagatag |
12636109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 24899084 - 24899220
Alignment:
| Q |
76 |
tcatgggtcaaatatgttaaacatccaagtctaattgaagtggaattgaatgctatgaagaatgagtatgatgtgagctatttaactaccaccttgagga |
175 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
24899084 |
tcatgggtcaaatatgttaaacatcaaagtccaattgaagtggaattgaatgctatgaagaatgagtatgatgtgagctatttaattaccaccttgatga |
24899183 |
T |
|
| Q |
176 |
-----caaggtgtttgtgtaagaccaatggaatgtaa |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
24899184 |
taaggtaaggtgtttgtgcaagaccaatggaatgtaa |
24899220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 208
Target Start/End: Original strand, 56328958 - 56329086
Alignment:
| Q |
76 |
tcatgggtcaaatatgttaaacatccaagtctaattgaagtggaattgaatgctatgaagaatgagtatgatgtgagctatttaactaccaccttgagga |
175 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| || |||| ||||||||| |||||| ||||||||| |||||||| ||||| || ||||| ||||| |
|
|
| T |
56328958 |
tcatgggtcaaatatgttaa-catcaaagtccaaatgaaa--gaattgaatt-tatgaacaatgagtatattgtgagctttttaattatcacctcgagga |
56329053 |
T |
|
| Q |
176 |
caaggtgtttgtgtaagaccaatggaatgtaat |
208 |
Q |
| |
|
|||||||||||| | || |||||||||||||| |
|
|
| T |
56329054 |
taaggtgtttgtgcatgatcaatggaatgtaat |
56329086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 22621070 - 22620937
Alignment:
| Q |
76 |
tcatgggtcaaatatgttaaacatccaagtctaattgaagtggaattgaatgctatgaagaatgagtatgatgtgagctatttaactaccaccttgagga |
175 |
Q |
| |
|
||||||||||||| || ||||||| |||||||| | |||||||||||| | || ||||||||| ||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
22621070 |
tcatgggtcaaatgtgctaaacattaaagtctaaatagagtggaattgaa-gttaggaagaatgactataatgtgagctttttaattaccaccttgagga |
22620972 |
T |
|
| Q |
176 |
caaggtgtttgtgtaagaccaatggaatgtaatga |
210 |
Q |
| |
|
|||||||||| || |||| || ||||||||||||| |
|
|
| T |
22620971 |
caaggtgtttctgcaagaacagtggaatgtaatga |
22620937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 45134991 - 45134908
Alignment:
| Q |
128 |
ctatgaagaatgagtatgatgtgagctatttaactaccaccttgaggacaaggtgtttgtgtaagaccaatggaatgtaatgac |
211 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||| |||||| ||||||| |||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
45134991 |
ctatgaagaatgagtataatgtaagctttttaattaccacattgaggataaggtgtttgtgcaagatcaatggaatataatgac |
45134908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 38086470 - 38086345
Alignment:
| Q |
84 |
caaatatgttaaacatccaagtctaattgaagtggaattgaatgctatgaagaatgagtatgatgtgagctatttaactaccaccttgaggacaaggtgt |
183 |
Q |
| |
|
||||||| || |||||| |||||||| || ||||||||||||| | |||||||||||||| |||||| || ||||| |||||| || |||||| |||| |
|
|
| T |
38086470 |
caaatatatttaacatcaaagtctaaatggagtggaattgaatt-tgtgaagaatgagtattatgtgaact-tttaattaccacattaaggacattgtgt |
38086373 |
T |
|
| Q |
184 |
ttgtgtaagaccaatggaatgtaatgac |
211 |
Q |
| |
|
||||| || ||||||| ||||||||||| |
|
|
| T |
38086372 |
ttgtgcaacaccaatgaaatgtaatgac |
38086345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 5559 - 5505
Alignment:
| Q |
156 |
tttaactaccaccttgaggacaaggtgtttgtgtaagaccaatggaatgtaatga |
210 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5559 |
tttaattaccaccttaaggacaaggtgtttgtgcaagaccaatgggatgtaatga |
5505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University