View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13278_high_5 (Length: 301)

Name: NF13278_high_5
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13278_high_5
NF13278_high_5
[»] chr1 (1 HSPs)
chr1 (17-285)||(9375156-9375409)
[»] chr6 (1 HSPs)
chr6 (137-279)||(13280647-13280789)
[»] chr4 (3 HSPs)
chr4 (153-260)||(55359136-55359244)
chr4 (67-167)||(47204727-47204827)
chr4 (151-202)||(32274313-32274364)
[»] chr8 (1 HSPs)
chr8 (127-260)||(21006537-21006670)
[»] chr7 (3 HSPs)
chr7 (212-284)||(30581774-30581846)
chr7 (142-202)||(12310506-12310566)
chr7 (17-61)||(30581604-30581648)
[»] chr2 (1 HSPs)
chr2 (124-246)||(35656357-35656478)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 9375156 - 9375409
Alignment:
Q  17 atggttttcacgtatattctagaagctttggttaaactacttgtggtccgagttacgtggtatttctagaagcttacttgttgtcggtttattttggtgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9375156 atggttttcacgtatattctagaagctttggttaaactacttgtgctccgagttacgtggtatttctagaagcttacttgttgccggtttattttggtgt 9375255  T
Q  117 gcgcttcaaattatttttaaaatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgtttag 216  Q
    ||||||||||||||||               |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  9375256 gcgcttcaaattattt---------------ttaaaatatattttgtgcttatagaaaattgttgctgaaattataattatggacatttgaattgtttag 9375340  T
Q  217 cctattgaagaaaaagctcatgcagaacaaagactatataaggaagactcaaccttaataacaagtatt 285  Q
     |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9375341 tctattgaagaaaaagctcatgcagaacaaagactatataaggaagattcaaccttaataacaagtatt 9375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 13280647 - 13280789
Alignment:
Q  137 aatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgtttagcctattgaagaaaaagctca 236  Q
    |||| ||||||||||||||||||||||| |||||| | ||||||| ||||| |||||||||||||| || |||||||||| | || |||| |||||| ||    
T  13280647 aatagatttggttaaaatatattttgtgtttatagaagattgttgatgaaaatataattatggacagctgaattgtttagtccatcgaagtaaaagcaca 13280746  T
Q  237 tgcagaacaaagactatataaggaagactcaaccttaataaca 279  Q
    || ||||||| |  |||||||  ||||||| ||||||||||||    
T  13280747 tggagaacaatggatatataataaagactctaccttaataaca 13280789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 55359244 - 55359136
Alignment:
Q  153 atatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgt-ttagcctattgaagaaaaagctcatgcagaacaaagact 251  Q
    |||||||||||| || ||| | ||||||| ||||| |||||||||||||| ||  ||||| |||||| ||||||||||||||||||||||||||| ||||    
T  55359244 atatattttgtgtttctagaagattgttgttgaaaatataattatggacaactggattgtgttagcccattgaagaaaaagctcatgcagaacaatgact 55359145  T
Q  252 atataagga 260  Q
    |||||||||    
T  55359144 atataagga 55359136  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 47204827 - 47204727
Alignment:
Q  67 agttacgtggtatttctagaagcttacttgttgtcggtttattttggtgtgcgcttcaaattatttttaaaatatatttggttaaaatatattttgtgct 166  Q
    |||||||| || ||| |||||| ||| || |||||||||||  |||  |||| |||||| |||||||||| ||| ||||| || ||||||||| ||||||    
T  47204827 agttacgttgtgtttttagaagattatttattgtcggtttaagttgtcgtgcacttcaagttatttttaagatagatttgtttcaaatatattgtgtgct 47204728  T
Q  167 t 167  Q
    |    
T  47204727 t 47204727  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 32274364 - 32274313
Alignment:
Q  151 aaatatattttgtgcttataggaaattgttgctgaaattataattatggaca 202  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||  ||||||||    
T  32274364 aaatatattttgtgcttctagaaaattgttgctgaaaatatatatatggaca 32274313  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 21006537 - 21006670
Alignment:
Q  127 ttatttttaaaatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgtttagcctattgaag 226  Q
    ||||||| |||||| ||||||   ||||||||||||||||| ||  | ||||||| ||||| |||||||||||| | || |||||||| ||| |||||||    
T  21006537 ttattttcaaaatagatttggaacaaatatattttgtgcttctaaaagattgttgttgaaaatataattatggatagctgaattgttttgcccattgaag 21006636  T
Q  227 aaaaagctcatgcagaacaaagactatataagga 260  Q
    ||||||  |||| ||||||| | |||||||||||    
T  21006637 aaaaagaccatgtagaacaatggctatataagga 21006670  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 30581774 - 30581846
Alignment:
Q  212 tttagcctattgaagaaaaagctcatgcagaacaaagactatataaggaagactcaaccttaataacaagtat 284  Q
    |||||||  ||||||||||||||||||||| |||| | |||||||||||||| |||||| |||||||||||||    
T  30581774 tttagccctttgaagaaaaagctcatgcaggacaatggctatataaggaagagtcaaccctaataacaagtat 30581846  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 12310566 - 12310506
Alignment:
Q  142 atttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggaca 202  Q
    ||||| || ||||||||||||||||| ||| | |||||||||||||||||| ||| |||||    
T  12310566 atttgtttcaaatatattttgtgcttctagaagattgttgctgaaattatacttaaggaca 12310506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 30581604 - 30581648
Alignment:
Q  17 atggttttcacgtatattctagaagctttggttaaactacttgtg 61  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||    
T  30581604 atggttttcacgtgtattctagaagctttgattaaattacttgtg 30581648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 246
Target Start/End: Complemental strand, 35656478 - 35656357
Alignment:
Q  124 aaattatttttaaaatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaatt-gtttagcctatt 222  Q
    |||| ||||| |||||||||||||  |||| | |||  |||||| ||| | ||| ||||||||| ||||||| ||||||  | || | |||| |||||||    
T  35656478 aaatcattttcaaaatatatttggaaaaaaaaaatt--gtgcttgtagaagattattgctgaaaatataattgtggacagatgaaatcgtttggcctatt 35656381  T
Q  223 gaagaaaaagctcatgcagaacaa 246  Q
    ||||||||| ||||||||||||||    
T  35656380 gaagaaaaacctcatgcagaacaa 35656357  T

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