View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13278_low_1 (Length: 555)
Name: NF13278_low_1
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13278_low_1 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 43633 - 43098
Alignment:
| Q |
1 |
gagggagtggtatttttggttagttctcatgtctcattgtttgtcatttggctacatataaaactaacataaataaattgttgtctttctgtttgaacat |
100 |
Q |
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| T |
43633 |
gagggagtggtatttttggttagttctcatgtctcattgtttgtcatttggctacatataaaactaacataaataaattgttgtctttctgtttgaacat |
43534 |
T |
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| Q |
101 |
atatatcactgtattgtttttctattcaaatagaaaatgaaacagtgtatgttaggaaaatagcaaaagatactccaactcagatatatgaatttgtctc |
200 |
Q |
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| T |
43533 |
atgt--cactgtattgtttttctattcaaatagaaaatgaaacagtgtatgttaggaaaatagcaaaagatactccaactcagatatatgaatttatctc |
43436 |
T |
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| Q |
201 |
tatattctaatgtcactgtaatgtaccttaattatgtaacatttgaatgttgcatcctaatttaatgaccgattgatttgtttccaagcagggaagaatt |
300 |
Q |
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| T |
43435 |
tatattctaatgtcactgtaatgtaccttaattatgtaacatttgaatgttgcatcctaatttaatgaccgattgatttgtttccaagcagggaagaatt |
43336 |
T |
|
| Q |
301 |
tacagcacactgcctagaatttcaaagagaaattgacaatagagaaaattgtaaagtcaggactttgttggcagagaaatattcacttgaaaatgaaatt |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43335 |
tacaacacactgcctagaatttcaaagagaaattgacaatagagaaaattgtaaagtcaggactttgttggcagagaaatattcacttgaaaatgaaatt |
43236 |
T |
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| Q |
401 |
caacttctggatgagaagaattgtgttttgaaaaattcggttttggcatttgtagaggaaattcttgaagatcttcataattcaaactcaggtaataata |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43235 |
caacttctggatgagaagaattgtgttttgaaaaattcggttttggcatttgtagaggaaattcttgaagatcttcataattcaaactcaggtaataata |
43136 |
T |
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| Q |
501 |
tatgtatacaaggaagtaggtttttcatgctagttatt |
538 |
Q |
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| T |
43135 |
tatgtatacaaggaagtaggtttttcatgctagttatt |
43098 |
T |
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