View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13278_low_2 (Length: 407)
Name: NF13278_low_2
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13278_low_2 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 929895 - 929746
Alignment:
| Q |
7 |
gtatcaaaggtgggaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttg |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
929895 |
gtatcaaaggtggtaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttg |
929796 |
T |
|
| Q |
107 |
aaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
929795 |
aaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 929441 - 929362
Alignment:
| Q |
244 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 929340 - 929271
Alignment:
| Q |
318 |
tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggct |
387 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggct |
929271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 1201474 - 1201614
Alignment:
| Q |
203 |
tatttgataaatacattactctggctgcactatatatatattcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttattt |
302 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
1201474 |
tatttgataaattaattactctggctgaactatatccata------atacatttttcatatcatacaaaaacttcacgaggtcctgattgtgagttattg |
1201567 |
T |
|
| Q |
303 |
catcgtcttactgtt----tcttattcggactttctttaatgtttca |
345 |
Q |
| |
|
||| ||||||||||| |||||||| || | |||||||||||||| |
|
|
| T |
1201568 |
cattgtcttactgttttaatcttattcagattatctttaatgtttca |
1201614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 387
Target Start/End: Original strand, 1201640 - 1201681
Alignment:
| Q |
346 |
gaagaccgtctaagttcggctgttgtgcccgaatgtttggct |
387 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1201640 |
gaagagcgtctaagttctgctgttgtgcccgaatgtttggct |
1201681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
169 |
ggatggaatcgaggactaaaccgttaaacggttat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 24941 - 24981
Alignment:
| Q |
7 |
gtatcaaaggtgggaagaaaggtaggaaattctcacattta |
47 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
24941 |
gtatcaaaggtggtaagaaagataggaaatgctcacattta |
24981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University