View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13278_low_3 (Length: 355)
Name: NF13278_low_3
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13278_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 6241033 - 6241104
Alignment:
| Q |
175 |
ttttaaaaggtttcgctaacaaatgtcagtgatttaaaaattaaaacaattgttactttcatgtataaaaaa |
246 |
Q |
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| T |
6241033 |
ttttaaagggtttcgctaacaaatgtcagtgatttaaaaatgaaaacaattgttactttcatgtataaaaaa |
6241104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 6212011 - 6212075
Alignment:
| Q |
46 |
tcatcagagaggagataggaaattgtgttggaaaaagaataattttattttcatttgtatccttc |
110 |
Q |
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| T |
6212011 |
tcatcagagaggagataggaaattgtgttggaaaaagaataattttgttttcatttgtatccttc |
6212075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 6240904 - 6240968
Alignment:
| Q |
46 |
tcatcagagaggagataggaaattgtgttggaaaaagaataattttattttcatttgtatccttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6240904 |
tcatcagagaggagataggaaattgtgttggaaaaagaataattttattttcatttttatccttc |
6240968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 6212141 - 6212177
Alignment:
| Q |
207 |
tttaaaaattaaaacaattgttactttcatgtataaa |
243 |
Q |
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| T |
6212141 |
tttaaaaatgaaaacaattgttattttcatgtataaa |
6212177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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