View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13278_low_4 (Length: 349)
Name: NF13278_low_4
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13278_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 26630243 - 26629914
Alignment:
| Q |
9 |
gatgcatttgcatctcaattttaaaatataaaaataatcacttttacagttgatgttatttatgacctctaacttatttctcaactgtgtataggagtac |
108 |
Q |
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| T |
26630243 |
gatgcatttgcatctcaattttaaa-tataaaacttatcacatttacaattgatgttatttatgacctctaacttatttctcaactgtgtataggagtac |
26630145 |
T |
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| Q |
109 |
cctttgtggatgtattgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactca |
208 |
Q |
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| T |
26630144 |
cctttgtggatgtgttgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactca |
26630045 |
T |
|
| Q |
209 |
aggtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgcaaggttcgctaaatggcgcgccgtgctaaagatcggtccaaatgaacca |
308 |
Q |
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| T |
26630044 |
aggtttggatgaccttggtcagaggtgcaagaaatactatgaagctggtgcaaggtttgctaaatggcgcgccgtgctaaagatcggtccaaatgaacca |
26629945 |
T |
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| Q |
309 |
tctcccttgtcaatccacgaaaacgcctatg |
339 |
Q |
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| T |
26629944 |
tctcccttgtcaatccacgaaaacgcctatg |
26629914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 311
Target Start/End: Complemental strand, 29233974 - 29233774
Alignment:
| Q |
111 |
tttgtggatgtattgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactcaag |
210 |
Q |
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| T |
29233974 |
tttgttgatgtcttgaacgaagctggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactcagg |
29233875 |
T |
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| Q |
211 |
gtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgcaaggttcgctaaatggcgcgccgtgctaaagatcggtccaaatgaaccatc |
310 |
Q |
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|| | |||| |||||| | || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||||| || ||||| ||||| |
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| T |
29233874 |
gtcttgatggacttggtgctcgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatc |
29233775 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
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| T |
29233774 |
t |
29233774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 311
Target Start/End: Complemental strand, 29237724 - 29237524
Alignment:
| Q |
111 |
tttgtggatgtattgaagaaagctggagttcttcctggtatcaaggttgacaagggaaccgttgaacttgccggcacaaacggagaaaccacaactcaag |
210 |
Q |
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| T |
29237724 |
tttgttgatgtcttgaacgaagctggtgtgcttcctggtatcaaggttgacaagggtaccgttgagcttgccggaactgatggagaaaccaccactcagg |
29237625 |
T |
|
| Q |
211 |
gtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgcaaggttcgctaaatggcgcgccgtgctaaagatcggtccaaatgaaccatc |
310 |
Q |
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|| | |||| |||||| | || |||||||||||||| |||||| | |||||||||||||| || ||||| || ||||| || ||||| ||||| |
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| T |
29237624 |
gtcttgatggacttggtgctcgttgtgctaagtactatgaagctggtgcacgtttcgctaaatggcgtgcagtgcttaaaatcggccccaatgagccatc |
29237525 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
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| T |
29237524 |
t |
29237524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 42027981 - 42028045
Alignment:
| Q |
195 |
gaaaccacaactcaaggtttggatgaccttggtcagaggtgcaagaagtactatgaagccggtgc |
259 |
Q |
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| T |
42027981 |
gaaaccaccactcaaggtttggacgggcttggtcagcgttgccagaagtactatgaagctggtgc |
42028045 |
T |
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