View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13278_low_5 (Length: 313)
Name: NF13278_low_5
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13278_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 301
Target Start/End: Original strand, 41431413 - 41431698
Alignment:
| Q |
15 |
aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatatcacatttagtattcaa |
114 |
Q |
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| T |
41431413 |
aaaaggtccaggaacagtggaaaatgttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatatcacatttagtattcaa |
41431512 |
T |
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| Q |
115 |
tatactttttggacctgatgaactttattaatgcgtatatcccgttcatagttgattttttctaccaaatcccgttcatagctattgaaatggttggtct |
214 |
Q |
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| T |
41431513 |
tatactttttggacctgatgaactttattaatgcgtatatcc-gatcatagttgattttttctaccaaatcccgttcatagctattgaaatggttggtct |
41431611 |
T |
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| Q |
215 |
agttcctgtcttatcgaaagggtgttggatttctttacaatacatccttattgaatagtgccataggttgtgttcactccgtatatt |
301 |
Q |
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| T |
41431612 |
agttcctgtcttatcgaaagggtgttggatttctttacaatacatccttattgaatagtgccataggttgtgttcactccatatatt |
41431698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 41441970 - 41442054
Alignment:
| Q |
15 |
aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatatc |
99 |
Q |
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| T |
41441970 |
aaaaaatccaggaagagtggaggattctggagaagcatttgccgggtgagtttagtattcgtgacacaaaatagcttgtaatatc |
41442054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 41453252 - 41453320
Alignment:
| Q |
30 |
agtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat |
98 |
Q |
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| T |
41453252 |
agtggaagattttgaaaaagcatttgccaggtgagtttggtattctttatactaaatagcttgtaatat |
41453320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 33363235 - 33363318
Alignment:
| Q |
15 |
aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat |
98 |
Q |
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| T |
33363235 |
aaaaaatccaggaagagtggaggattttggaggagcatttgccgggtgagtttagtattcctgatactaaatagcttgtaatat |
33363318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 33369666 - 33369749
Alignment:
| Q |
15 |
aaaaagtccaggaacagtggaaaattttggaggagcatttgccaggcgagtttagtattcctgatactaaatagcttgtaatat |
98 |
Q |
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| T |
33369666 |
aaaaaatccaggaagagtggaagattttggaggagcattttccgggcgagtttagtattcttgttgctaaatagcttgtaatat |
33369749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 33369859 - 33369908
Alignment:
| Q |
186 |
ccgttcatagctattgaaatggttggtctagttcctgtcttatcgaaagg |
235 |
Q |
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| T |
33369859 |
ccgttcattgctattgaaatggtaggtctagttcatgtcttatcggaagg |
33369908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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