View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13278_low_7 (Length: 268)

Name: NF13278_low_7
Description: NF13278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13278_low_7
NF13278_low_7
[»] chr5 (4 HSPs)
chr5 (144-244)||(19237546-19237646)
chr5 (22-89)||(37228378-37228446)
chr5 (53-89)||(37234344-37234380)
chr5 (194-253)||(23622450-23622509)
[»] scaffold0341 (2 HSPs)
scaffold0341 (149-241)||(2101-2193)
scaffold0341 (149-241)||(9756-9848)
[»] chr1 (3 HSPs)
chr1 (149-241)||(6508076-6508168)
chr1 (144-245)||(5185430-5185531)
chr1 (147-244)||(24065096-24065193)
[»] chr8 (2 HSPs)
chr8 (147-244)||(2246881-2246978)
chr8 (144-245)||(26932020-26932121)
[»] chr6 (1 HSPs)
chr6 (147-247)||(23509007-23509107)
[»] chr3 (1 HSPs)
chr3 (187-253)||(19770677-19770743)
[»] chr4 (1 HSPs)
chr4 (149-238)||(13685893-13685982)
[»] chr7 (1 HSPs)
chr7 (147-250)||(33611187-33611290)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 19237546 - 19237646
Alignment:
Q  144 gttgattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctc 243  Q
    |||||||||||||||||||||||||| | ||||||| | | | |||||  |||||| ||||| |||||||||||||| ||||| || |||||||| ||||    
T  19237546 gttgattttgaaacggattccaagcttacttgtgatgccttccatgctcatcgagatgacacttttgaatttgggtgcattatctcatcatgtcgatctc 19237645  T
Q  244 t 244  Q
    |    
T  19237646 t 19237646  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 37228378 - 37228446
Alignment:
Q  22 tattcattaaaaattacatttcgaatatattttgcg-caactcaaggtaacacaagggtcaagattgta 89  Q
    |||| |||||||| ||||||||||||||||| | || ||||||||||||| ||||||||||||||||||    
T  37228378 tatttattaaaaactacatttcgaatatattcttcggcaactcaaggtaaaacaagggtcaagattgta 37228446  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 37234344 - 37234380
Alignment:
Q  53 ttgcgcaactcaaggtaacacaagggtcaagattgta 89  Q
    |||||||||||||||||||||||||||||||||||||    
T  37234344 ttgcgcaactcaaggtaacacaagggtcaagattgta 37234380  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 23622450 - 23622509
Alignment:
Q  194 tcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctctattcagctc 253  Q
    |||||||||||  | |||||||||||| ||||||||||| ||||| ||||| ||||||||    
T  23622450 tcgagacgacatttctgaatttgggtgcattatttcttcttgtcgatctcttttcagctc 23622509  T

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Target: scaffold0341 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 2193 - 2101
Alignment:
Q  149 ttttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttc 241  Q
    ||||||||||||||||||  | |  |||||| ||| || ||||| ||| |||||||| | ||||||||||||||||||| |||||||||||||    
T  2193 ttttgaaacggattccaaattgacgtgtgatgctttctgtgctactcgggacgacacttctgaatttgggtgtattattacttcatgtcgttc 2101  T

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Target: scaffold0341; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 9848 - 9756
Alignment:
Q  149 ttttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttc 241  Q
    ||||||||||||||||||  | |  |||||| ||| || ||||| ||| |||||||| | ||||||||||||||||||| |||||||||||||    
T  9848 ttttgaaacggattccaaattgacgtgtgatgctttctgtgctactcgggacgacacttctgaatttgggtgtattattacttcatgtcgttc 9756  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Complemental strand, 6508168 - 6508076
Alignment:
Q  149 ttttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttc 241  Q
    ||||||||||||||||||  | |  |||||| ||| || ||||| ||| |||||||| | ||||||||||||||||||| |||||||||||||    
T  6508168 ttttgaaacggattccaaattgacgtgtgatgctttctgtgctactcgggacgacacttctgaatttgggtgtattattacttcatgtcgttc 6508076  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 5185531 - 5185430
Alignment:
Q  144 gttgattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctc 243  Q
    |||||||||||||| |||| |||||| | ||||||| | | | || ||| ||||||||||  || ||||||||| || ||||||| |||||||||| |||    
T  5185531 gttgattttgaaacagatttcaagcttacttgtgatgccttccatactactcgagacgactactctgaatttggatgcattattttttcatgtcgtactc 5185432  T
Q  244 ta 245  Q
    ||    
T  5185431 ta 5185430  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 24065096 - 24065193
Alignment:
Q  147 gattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctct 244  Q
    ||||||||||||||| ||||| | | ||||||| | | | |||||| |||||| ||||| | |||||||||||| ||||| || ||||| || |||||    
T  24065096 gattttgaaacggataccaagtttacttgtgatgccttccatgctaatcgagatgacacttctgaatttgggtgcattatctcatcatgccggtctct 24065193  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 2246978 - 2246881
Alignment:
Q  147 gattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctct 244  Q
    |||||||||||||||||||| || | ||||||| | | | |||||| |||||| ||||| | |||||||||||| ||||| || |||||||| |||||    
T  2246978 gattttgaaacggattccaaacttacttgtgatgcctcccatgctaatcgagatgacacttctgaatttgggtgcattatctcatcatgtcggtctct 2246881  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 26932121 - 26932020
Alignment:
Q  144 gttgattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctc 243  Q
    |||||||| ||||| ||||||||||| | ||||||| | | | || ||| | || |||||  || |||||||||||| ||||||||||| |||||| |||    
T  26932121 gttgatttcgaaacagattccaagcttacttgtgatgccttccatactacttgatacgactgctctgaatttgggtgcattatttcttcctgtcgtactc 26932022  T
Q  244 ta 245  Q
    ||    
T  26932021 ta 26932020  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 23509107 - 23509007
Alignment:
Q  147 gattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctctat 246  Q
    |||||||||| |||||||||||| | ||||||| | | | |||||| |||||| ||||| | ||||||| |||| ||||| || |||||||| |||||||    
T  23509107 gattttgaaatggattccaagcttaattgtgatgccttccatgctaatcgagatgacacttctgaatttaggtgcattatctcatcatgtcggtctctat 23509008  T
Q  247 t 247  Q
    |    
T  23509007 t 23509007  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 19770743 - 19770677
Alignment:
Q  187 atgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctctattcagctc 253  Q
    |||||| ||| |||||||| | ||||||| ||| |||||||||||||||||||||  ||||||||||    
T  19770743 atgctactcgggacgacacttctgaattttggtttattatttcttcatgtcgttccttattcagctc 19770677  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 13685893 - 13685982
Alignment:
Q  149 ttttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcg 238  Q
    ||||||||||||||||||||| | ||||||| | | | |||||| || || |||||| | |||||||||||| ||||| || ||||||||    
T  13685893 ttttgaaacggattccaagcttacttgtgatgcattccatgctaatcaaggcgacacttctgaatttgggtgcattatctcatcatgtcg 13685982  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 250
Target Start/End: Complemental strand, 33611290 - 33611187
Alignment:
Q  147 gattttgaaacggattccaagctaatttgtgatacttactatgctattcgagacgacacctttgaatttgggtgtattatttcttcatgtcgttctctat 246  Q
    ||||||||||| ||||| ||||| | ||||||| | | | |||||| |||||||||||| | ||||||| |||| ||||  || |||||||| ||||| |    
T  33611290 gattttgaaacagattctaagcttacttgtgatgcattccatgctaatcgagacgacacttatgaattttggtgcattacctcatcatgtcggtctctgt 33611191  T
Q  247 tcag 250  Q
    ||||    
T  33611190 tcag 33611187  T

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