View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_high_10 (Length: 349)
Name: NF13279_high_10
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 28 - 331
Target Start/End: Original strand, 53311624 - 53311923
Alignment:
| Q |
28 |
ttaaaagaaatattgacacttaaactctagttaataattaaatgctcttccacatatatgcaagttgggtgatgctgattaagcccattgtgttgttgcc |
127 |
Q |
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| T |
53311624 |
ttaaaagaaatattgacacttaaactctagttaataattaaatgctcttccacatatatgcaagttgggtgatgctgattaagcccattgtgttgttgcc |
53311723 |
T |
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| Q |
128 |
ccctctactaattaaatggatttttgttagcttgtgttaatggtccaatatgcatgtcattaaagtataaacatgcactgaactttcatagatatgctcc |
227 |
Q |
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| T |
53311724 |
ccctctact-----aatggatttttgttagcttgtgttaatggtccaatatgcatgtcattaaagtataaacatgcactgaactttcatagatgtgctcc |
53311818 |
T |
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| Q |
228 |
catgctagtttcagtgcacacaag-atgatttaggatttgacattttgcatttcactacagaagtcctccaccaccctacagtattctatgtatcacgta |
326 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
53311819 |
catgctagtttcagtgcacacaagaatgatttaggatttgacgttttgcatttcactacaggagtcctccaccaccctacagtattctctgtatcacgta |
53311918 |
T |
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