View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_high_12 (Length: 284)
Name: NF13279_high_12
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 6809309 - 6809574
Alignment:
| Q |
1 |
cacgccagggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcct |
100 |
Q |
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| T |
6809309 |
cacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcct |
6809408 |
T |
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| Q |
101 |
cttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6809409 |
cttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtac |
6809508 |
T |
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| Q |
201 |
acatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacatt |
266 |
Q |
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| T |
6809509 |
acatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgacatt |
6809574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6831952 - 6832215
Alignment:
| Q |
1 |
cacgccagggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcct |
100 |
Q |
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||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
6831952 |
cacgccaaggcttaaacctcctataagtagcagcaagatgcaatgcactgttaccattgatatcaacttgacgaaatgcagtctctttgattacactcct |
6832051 |
T |
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| Q |
101 |
cttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtac |
200 |
Q |
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| T |
6832052 |
cttatttaacaaactgtatacatgaggttgcctattctctatggccaaaagaacaacattcttgttctgactgtccacatcgtgaatagccacagggtac |
6832151 |
T |
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| Q |
201 |
acatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgaca |
264 |
Q |
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| T |
6832152 |
atgtctagaatattttcaatcatttcagtcactcccatctttgctgcaattaaaattggtgaca |
6832215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 6817449 - 6817701
Alignment:
| Q |
1 |
cacgccagggcttaaaccttctataagtagcagcaaggtgcaatgcactgttaccattgatatcaacttgacgaaatgcagtttccttgattatactcct |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
6817449 |
cacgccaaggcttaaaccttctataagtagcagcaaggtgcaatgcaccgttaccattga-----------cgaaatgcagtctccttgattattctcct |
6817537 |
T |
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| Q |
101 |
cttatttaacaaactgtatacatgaggttgcctattttctatggccaaaagaacaacatttttgttctgactgtccacatcttgaatagccacagggtac |
200 |
Q |
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|| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6817538 |
ctcatttaacaaactatatacatgaggttgcctattctctatggccaaaagaacaacatttttgttctgactgaccacatcttgaatagccacagggtac |
6817637 |
T |
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| Q |
201 |
acatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgaca |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6817638 |
acatctagaatcttttcaatcatttcagtcactcccatctttgctgcgattaaaattggtgaca |
6817701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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