View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13279_high_15 (Length: 256)

Name: NF13279_high_15
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13279_high_15
NF13279_high_15
[»] chr4 (3 HSPs)
chr4 (1-238)||(43560390-43560643)
chr4 (160-198)||(21173782-21173820)
chr4 (148-201)||(24359816-24359869)
[»] chr1 (4 HSPs)
chr1 (74-201)||(51044468-51044595)
chr1 (135-199)||(16138908-16138972)
chr1 (115-201)||(37962865-37962951)
chr1 (135-199)||(16127398-16127462)
[»] chr3 (2 HSPs)
chr3 (74-201)||(34626631-34626758)
chr3 (107-199)||(44674038-44674130)
[»] chr7 (1 HSPs)
chr7 (115-195)||(45676052-45676132)
[»] chr5 (1 HSPs)
chr5 (148-211)||(2590833-2590896)
[»] chr2 (4 HSPs)
chr2 (137-201)||(27172787-27172851)
chr2 (137-204)||(28205955-28206022)
chr2 (146-209)||(42789005-42789068)
chr2 (128-209)||(37881847-37881928)
[»] chr8 (8 HSPs)
chr8 (117-198)||(5960363-5960444)
chr8 (148-209)||(41351226-41351287)
chr8 (143-198)||(5843121-5843176)
chr8 (21-50)||(32297706-32297735)
chr8 (146-198)||(5849866-5849918)
chr8 (146-198)||(5921235-5921287)
chr8 (146-198)||(5949127-5949179)
chr8 (146-198)||(5984655-5984707)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 43560390 - 43560643
Alignment:
Q  1 tacaggactgtgataatttagtcaaactcatcgtgattccaaacatgcacaaaatgatatatgttgaatcatata----------------cctatttcc 84  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||                |||||||||    
T  43560390 tacaggactatgataatttagtcaaactcatggtgattccaaacatgcacaaaatgatatatgttgaatcatatattcgtatatgatgttacctatttcc 43560489  T
Q  85 aaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560490 aaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaa 43560589  T
Q  185 ctctttccacatctttgaagtcctgaagaaattcatcaaccatgttagactctt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43560590 ctctttccacatctttgaagtcctgaagaaattcatcaaccatgttagactctt 43560643  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 21173820 - 21173782
Alignment:
Q  160 atagtttatccatctcaatctacaactctttccacatct 198  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  21173820 atagtttagccatctcaatctacaactttttccacatct 21173782  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 24359816 - 24359869
Alignment:
Q  148 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 201  Q
    |||||||||||| || || |||||||| || |||||||| ||||||||||||||    
T  24359816 atcaggcctcaagtaattgatccatcttaacctacaactttttccacatctttg 24359869  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 51044595 - 51044468
Alignment:
Q  74 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 173  Q
    ||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  51044595 tacctatttccaagtgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatc 51044496  T
Q  174 tcaatctacaactctttccacatctttg 201  Q
    |||||||||| ||||||||||| |||||    
T  51044495 tcaatctacagctctttccacacctttg 51044468  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 16138908 - 16138972
Alignment:
Q  135 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 199  Q
    |||||||||| | ||||||  | |||||||| |||||||||||||||||||||||||||||||||    
T  16138908 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccacatctt 16138972  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 37962951 - 37962865
Alignment:
Q  115 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 201  Q
    ||||||||||||||||||   |||||| || |||||||||||||| || ||||||||||| || || |||||||| ||||| |||||    
T  37962951 ctcttcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttg 37962865  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 16127398 - 16127462
Alignment:
Q  135 ttcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 199  Q
    |||||||||| | |||||  || ||||| || |||||||||||||||||||||||||||||||||    
T  16127398 ttcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccacatctt 16127462  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 201
Target Start/End: Original strand, 34626631 - 34626758
Alignment:
Q  74 tacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatc 173  Q
    ||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| |||||||| |||| |||||| |||||||    
T  34626631 tacctatttccaagtgcttcatgaagattgataataagatcttcctcttgttttgagaacattcctctcttcaaatcaggtctcagatagttgatccatc 34626730  T
Q  174 tcaatctacaactctttccacatctttg 201  Q
    ||||||||||||||||||||||||||||    
T  34626731 tcaatctacaactctttccacatctttg 34626758  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 44674130 - 44674038
Alignment:
Q  107 ataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctt 199  Q
    |||||||| ||||||||||  | |||  |||||||||| | |||||| || |  || ||||||||||||||||| |||||||| |||||||||    
T  44674130 ataagatcatcttcttgttcagtgaagtttcctctcttgagatcaggtcttaggtaatttatccatctcaatctgcaactcttgccacatctt 44674038  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 45676052 - 45676132
Alignment:
Q  115 ctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccaca 195  Q
    ||||||||| | ||||||   ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||| |||||    
T  45676052 ctcttcttgctctgagaatgctcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccaca 45676132  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 2590896 - 2590833
Alignment:
Q  148 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctgaa 211  Q
    ||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||||||| ||||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacctttgaagccctgaa 2590833  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 27172787 - 27172851
Alignment:
Q  137 cctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttg 201  Q
    ||||| |||| ||| || |||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  27172787 cctctttttagatctggtctcaaatagtttgtccatcttaatctgcaactctttccacatctttg 27172851  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 28206022 - 28205955
Alignment:
Q  137 cctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaag 204  Q
    |||||||||||||||||||| | ||| || ||||||||||| | |||||| || ||||||| ||||||    
T  28206022 cctctctttaaatcaggcctaagataattgatccatctcaaacgacaacttttcccacatcgttgaag 28205955  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 42789005 - 42789068
Alignment:
Q  146 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 209  Q
    |||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || |||||||    
T  42789005 aaatcaggtcttaaataatttatccatctcaacctgcaactttttccacatctctgcagtcctg 42789068  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 37881847 - 37881928
Alignment:
Q  128 gagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 209  Q
    |||||| |||||||||| | |||||| |||||||||||| ||||||  |  | ||||||||| ||||| |||||||| ||||    
T  37881847 gagaaccttcctctcttgatatcaggtctcaaatagtttgtccatcgaagacgacaactcttaccacacctttgaagacctg 37881928  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 5960363 - 5960444
Alignment:
Q  117 cttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 198  Q
    |||||||||| |||||  |||| |  || |||||||| || | ||| ||||||||||| |||||||||||||||||||||||    
T  5960363 cttcttgttgagagaaacttccacgtttcaaatcaggtcttagataatttatccatcttaatctacaactctttccacatct 5960444  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 41351226 - 41351287
Alignment:
Q  148 atcaggcctcaaatagtttatccatctcaatctacaactctttccacatctttgaagtcctg 209  Q
    |||||| |||||||| ||||||||||| |||| ||||||||| ||||| |||||||| ||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccacacctttgaagccctg 41351287  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 5843121 - 5843176
Alignment:
Q  143 tttaaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 198  Q
    ||||||||||| || | ||| ||||||||||| ||||||||||| |||||||||||    
T  5843121 tttaaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5843176  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 50
Target Start/End: Complemental strand, 32297735 - 32297706
Alignment:
Q  21 gtcaaactcatcgtgattccaaacatgcac 50  Q
    ||||||||||||||||||||||||||||||    
T  32297735 gtcaaactcatcgtgattccaaacatgcac 32297706  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 5849866 - 5849918
Alignment:
Q  146 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 198  Q
    |||||||| || | ||| ||||||||||| ||||||||||| |||||||||||    
T  5849866 aaatcaggtcttagataatttatccatcttaatctacaactttttccacatct 5849918  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 5921235 - 5921287
Alignment:
Q  146 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 198  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5921235 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5921287  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 5949127 - 5949179
Alignment:
Q  146 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 198  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5949127 aaatcaggtcttagataatttatccatcttaatcttcaactctttccacatct 5949179  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 5984655 - 5984707
Alignment:
Q  146 aaatcaggcctcaaatagtttatccatctcaatctacaactctttccacatct 198  Q
    |||||||| || | ||| ||||||||||| ||||| |||||||||||||||||    
T  5984655 aaatcaggtcttagataatttatccatcttaatctgcaactctttccacatct 5984707  T

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