View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13279_high_2 (Length: 825)
Name: NF13279_high_2
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_high_2 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 357 - 806
Target Start/End: Original strand, 24493177 - 24493626
Alignment:
| Q |
357 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493177 |
tgttttccttggttattctacacaatatcactcttatatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
24493276 |
T |
|
| Q |
457 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccac |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
24493277 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgctcacttcccaacatccgtggctcccactccctaatatcttttcccacccac |
24493376 |
T |
|
| Q |
557 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttc |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493377 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttc |
24493476 |
T |
|
| Q |
657 |
acccacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataac |
756 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493477 |
acccacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataac |
24493576 |
T |
|
| Q |
757 |
atacacaagccaaacaaaaagtatttgttggtcacaaaacatcctttacc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493577 |
atacacaagccaaacaaaaagtatttgttggtcacaaaacatcctttacc |
24493626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 357 - 766
Target Start/End: Original strand, 92542 - 92951
Alignment:
| Q |
357 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
456 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92542 |
tgttttacttggttattctacacaatatcactcttacatttgtctagatcgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
92641 |
T |
|
| Q |
457 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccac |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
92642 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccactccccaacatccgtggctcccactccctaatatcttaacccacccac |
92741 |
T |
|
| Q |
557 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttc |
656 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92742 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaaccaaacccactccttcaaacacaaatagcattcaaccatcaccttc |
92841 |
T |
|
| Q |
657 |
acccacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataac |
756 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
92842 |
actcacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataac |
92941 |
T |
|
| Q |
757 |
atacacaagc |
766 |
Q |
| |
|
|||||||||| |
|
|
| T |
92942 |
atacacaagc |
92951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 22684532 - 22684888
Alignment:
| Q |
8 |
caccagagacgcttt-catcagaagtgtaagtgcaatagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagaga |
106 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684532 |
caccagagacacttttcatcagaagtgtaagtgcaacagagcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagaga |
22684631 |
T |
|
| Q |
107 |
gggccacaaataaacttgaaaacactaaagttgttctgataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684632 |
gggccacaaataaacttgaaaacactaaagttgttttaataaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgct |
22684731 |
T |
|
| Q |
207 |
tgatgcaacaggcaataatattaaggcaatttttgccaaaggagtcacaacctataaataaaacaaaacacataaatttgttaaaacgtgtcatctatgt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
22684732 |
tgatgcaacaggcaataatattaaggcaaattttgccaaaggagtcacaacctataaataaaacaaaacacagaaatttgttaaaatgtgtcatctatgt |
22684831 |
T |
|
| Q |
307 |
gataaaacatgaatttaaagtcaagaaaaaaggaacaaggagattaattttgttttc |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22684832 |
gataaaacatgaatttaaagtcaagaaaaaaggaacaaggagattaattttgatttc |
22684888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 46 - 326
Target Start/End: Original strand, 22695870 - 22696146
Alignment:
| Q |
46 |
agcaacgcacaaaggtagtaataatagtatggacaatacttaccaaaatatggaaaagagagggccacaaataaacttgaaaacactaaagttgttctga |
145 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
22695870 |
agcaatgcacaaaggtagtaataatggtatg-acaaaacttaccaaaatatggaaaagagagggccacaactaaacttgaaaccactaaagctgttctga |
22695968 |
T |
|
| Q |
146 |
taaaaagagacatagcataacatcttagcctaggagaagggacgacaagttcctctatgcttgatgcaacaggcaataatattaaggcaatttttgccaa |
245 |
Q |
| |
|
| | || |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||||||| |
|
|
| T |
22695969 |
tgagaatagacataggataacatcttagcctaggagaagggac---aagttcctctatgcttgatgcaataggcaataatgttaaggcatattttgccag |
22696065 |
T |
|
| Q |
246 |
aggagtcacaacctataaataaaacaaaacacataaatttgttaaaacgtgtcatctatgtgataaaacatgaatttaaag |
326 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22696066 |
aggagtcacaacctatatgtaaaataaaacacagaaatttgttaaaatttgtcatctatgtgataaaacatgaatttaaag |
22696146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University