View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13279_high_3 (Length: 821)
Name: NF13279_high_3
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_high_3 |
 |  |
|
| [»] scaffold0115 (1 HSPs) |
 |  |  |
|
| [»] scaffold0634 (1 HSPs) |
 |  |  |
|
| [»] scaffold0155 (1 HSPs) |
 |  |  |
|
| [»] scaffold0057 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 16)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 242 - 739
Target Start/End: Original strand, 5482041 - 5482538
Alignment:
| Q |
242 |
ctatgcttagtagatggaatctctacaagctccagcatctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5482041 |
ctatgcttagtagatggaatctctacaagctccagcaactagacctgtcatataattatctaacaggtgatacaactgaaacgattgaggccttgtcttg |
5482140 |
T |
 |
| Q |
342 |
tggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgat |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5482141 |
tggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgttctttcttgat |
5482240 |
T |
 |
| Q |
442 |
ctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaata |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
5482241 |
ctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccaacctctataggaaacttatcaaatctaaatcatctgagcttggagaata |
5482340 |
T |
 |
| Q |
542 |
acaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatat |
641 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5482341 |
acatgatgactggtataattcctgaatgtatcagtcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatat |
5482440 |
T |
 |
| Q |
642 |
tcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccacctttta |
739 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5482441 |
tcattttaataatctcacaaacctagtgagtttaactctgtcataaaaaaacaacacatttgcattgaaattgacaaatgactgggttccacctttta |
5482538 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 241 - 779
Target Start/End: Original strand, 5490097 - 5490635
Alignment:
| Q |
241 |
tctatgcttagtagatggaatctctacaagctccagcatctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtctt |
340 |
Q |
| |
|
||||||||| | |||||||| |||| |||||| || |||| || |||| ||||||| ||| | | ||||| ||||||||||||||||| |||||| |
|
|
| T |
5490097 |
tctatgcttggaagatggaagctctgcaagcttcaatttctatacttgtcgtataattctcttattgctgatatgactgaaatgattgaggcaatgtctt |
5490196 |
T |
 |
| Q |
341 |
gtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttga |
440 |
Q |
| |
|
|| | |||||||| |||||| |||| |||| || ||||||||| |||||| ||||| || |||||| || ||||| | |||| | |||||| |
|
|
| T |
5490197 |
gtagcaaccaaagtctgaagagtttagatttaagtcaaaatcaactatttgggaatttgcccaatagtttaggtcagtttaaaaatttgtttagtcttga |
5490296 |
T |
 |
| Q |
441 |
tctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaat |
540 |
Q |
| |
|
||| ||||| ||||| || ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||||| || |
|
|
| T |
5490297 |
tctatcaaaaaactcatggaacacacactcaggtgtctcaggtcctataccagcatctataggaaacttatcaaatttgaattctctgagcttggaaggc |
5490396 |
T |
 |
| Q |
541 |
aacaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaata |
640 |
Q |
| |
|
|||| | ||| ||| | |||||||||| |||| ||||||| || |||||| || |||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5490397 |
aacatgttgaatgggacaattcctgaaagtatcggtcaactaacagatttgttttctctaaacttacttgacaattattgggaaggtataatgacaaata |
5490496 |
T |
 |
| Q |
641 |
ttcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaa |
740 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||| || ||||||||||||| || ||| ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5490497 |
ttcattttcataatctctcaaacctacgtagtttatctgtgtcatctaaaaagaatacacttgctttgaaagtgacaaatgactgggttccagcttttaa |
5490596 |
T |
 |
| Q |
741 |
gtatttgagttatgtcgaaatacatgattgtcaagttgg |
779 |
Q |
| |
|
| ||||| |||||||||||| | ||||||| ||||||| |
|
|
| T |
5490597 |
gaatttgtcttatgtcgaaattcgtgattgtaaagttgg |
5490635 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 279 - 779
Target Start/End: Original strand, 5495920 - 5496420
Alignment:
| Q |
279 |
tctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagt |
378 |
Q |
| |
|
||||||||| |||| ||||| | | || ||||||| | |||| | ||||||||| |||||||| | |||||||| ||| ||| || ||||| || | |
|
|
| T |
5495920 |
tctagacctatcatctaattttattactggtgatatagctgataccattgaggccatgtcttgtagcaaccaaagtttgatgttgttggatttgagttat |
5496019 |
T |
 |
| Q |
379 |
aatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgatctttcaaacaactctgtcaattcacactcaggtatct |
478 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| | |||| || | || | ||||| | |||| ||| | || ||||||||||||||| ||| |
|
|
| T |
5496020 |
aaccaactaactgggaaattgcctcattctttagggaagtttaccaatctgtttaggcttgacatatcaagaaacacagtaaattcacactcaggtgtct |
5496119 |
T |
 |
| Q |
479 |
caggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtca |
578 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||||||||| || ||| ||| || |||| ||||| ||| | |||||||||| |||| |||| |
|
|
| T |
5496120 |
caggtccaataccaacatctataggaaacttatcaaatctacgttctctttacttggaaggcaacatgatgaatggaacaattcctgaaagtattggtca |
5496219 |
T |
 |
| Q |
579 |
acttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaact |
678 |
Q |
| |
|
||| ||||| |||| || ||| | |||||||||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||| ||||| || |
|
|
| T |
5496220 |
actaaccaaattgttttccctacacctacttgagaatgattggaaaggtataatgacaaatattcattttcataatcttacaaacctagtcagtttctct |
5496319 |
T |
 |
| Q |
679 |
atgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaagttg |
778 |
Q |
| |
|
||||||||||||| | |||| ||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||| | |||||||||| ||| |
|
|
| T |
5496320 |
gtgtcatctaaaaagagcacacttgctttgaaagtgacaaataactgggttccaccttttaaggatttgcaatatgttgaaattcgtgattgtcaaattg |
5496419 |
T |
 |
| Q |
779 |
g |
779 |
Q |
| |
|
| |
|
|
| T |
5496420 |
g |
5496420 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 42622539 - 42622357
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42622539 |
ataggaagttaaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggata----------------ccattaaatccgcatccgt |
42622456 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |
|
|
| T |
42622455 |
attcattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgttccgtgtccgtgacggattttatccgcggat |
42622357 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 498 - 783
Target Start/End: Original strand, 5485384 - 5485669
Alignment:
| Q |
498 |
tataggaaacttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattat |
597 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||| || |||| ||||| ||| |||||||||||| |||| ||||||| ||||||||| ||| | |
|
|
| T |
5485384 |
tataggaaacttatcaaatctatattctctgaacttggaaggcaacatgatgaatgggataattcctgaaagtattggtcaactaaccaatttgaattct |
5485483 |
T |
 |
| Q |
598 |
ctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataaca |
697 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||||||||||| |||||| |||||||||||||||||| | |||||| |||| ||||||||| ||| |
|
|
| T |
5485484 |
ctaaacctacttgacaattattgggaaggtacaatgacaaatactcatttcaataatctcacaaacctaattagtttatctatttcatctaaactaaact |
5485583 |
T |
 |
| Q |
698 |
catttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaagttggccca |
783 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| ||||| | |||| || || | || |||||||||||||||| |
|
|
| T |
5485584 |
catttgctttgaaagtgacaaatgattgggttccaccttttaagaatttgtttcatgttgatattcgtggttgtcaagttggccca |
5485669 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 289 - 792
Target Start/End: Original strand, 5500962 - 5501462
Alignment:
| Q |
289 |
tcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaa |
388 |
Q |
| |
|
|||| |||||||||||| ||||||| ||| ||||||||||||||| ||||||| | |||| ||| || ||| || ||||| || |||||||||| |
|
|
| T |
5500962 |
tcatctaattatctaactggtgatataacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttggatttgagtcaaaatcaactaa |
5501061 |
T |
 |
| Q |
389 |
ctgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgatctttcaaacaactctgtcaattcacactcaggtatctcaggtcatat |
488 |
Q |
| |
|
|||||||||||| | |||||| ||| ||||||| || | | |||| || |||| ||||| | || || ||||||||||||||||||| ||| |
|
|
| T |
5501062 |
gtgggaaattgccccgttctttggggatgtttaacaaactgtttagtgttgacctgtcaagaaactcaatgaactcgcactcaggtatctcaggtcctat |
5501161 |
T |
 |
| Q |
489 |
accagcctctataggaaacttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtcaacttaccaat |
588 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | |||| ||| || |||| ||||| ||| | |||||| ||| |||| ||||||| |||||| |
|
|
| T |
5501162 |
accagcatctataggaaacttatcaaaactaggtgccctgaacttggaaggcaacatgatgaatgggacaattccagaaagtattggtcaactaaccaat |
5501261 |
T |
 |
| Q |
589 |
ttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaactatgtcatcta |
688 |
Q |
| |
|
||||||| |||| | ||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||| ||||| ||| ||||||||| |
|
|
| T |
5501262 |
ttgtattctctacacctacttggtaattattgggaaggtataatgacaaatattcatttcaat---ctcacaaagctagtcagtttcactgtgtcatcta |
5501358 |
T |
 |
| Q |
689 |
aaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaagttggcccagcatt |
788 |
Q |
| |
|
||||||||| | || |||||||| |||||||||| |||||||| |||||||||||||||||| | ||||||| || |||| | |||||||||||||| |
|
|
| T |
5501359 |
aaaataacaaactttctttgaaagtgacaaatgattgggttcccccttttaagtatttgagtcgtatcgaaattcacagttgtaatgttggcccagcatt |
5501458 |
T |
 |
| Q |
789 |
tcct |
792 |
Q |
| |
|
|||| |
|
|
| T |
5501459 |
tcct |
5501462 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 278 - 798
Target Start/End: Original strand, 5467377 - 5467897
Alignment:
| Q |
278 |
atctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtag |
377 |
Q |
| |
|
|||||||||| |||| |||| ||||||| ||||| |||| || | || ||||||||||||||| | |||||||||||| || || || ||||| | |
|
|
| T |
5467377 |
atctagacctatcatctaatgatctaaccattgatataactcaagtaatggaggccttgtcttgtagcaaccaaagcctggaggttctagatttgaatta |
5467476 |
T |
 |
| Q |
378 |
taatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgatctttcaaacaac-tctgtcaattcacactcaggtat |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || ||| ||||||| ||||| || |||||| ||| | | |||||| |||||| |
|
|
| T |
5467477 |
taatcaactaactgggaaattgcctcattcattaggaaaacttactagtttgcgtcagcttgacattagtaacaacctct-tgacctcacacataggtat |
5467575 |
T |
 |
| Q |
477 |
ctcaggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaat-aacaggatgactggtataattcctgaatgtataag |
575 |
Q |
| |
|
||| |||| ||||||||| ||||||||||| |||||||||||| | | | || || ||||| |||| ||||| ||| | |||||||||| | || | |
|
|
| T |
5467576 |
ctcgggtcctataccagcatctataggaaatttatcaaatctagaatttttgtattt-gagaaacaacatgatgaatgggacaattcctgaaagcattgg |
5467674 |
T |
 |
| Q |
576 |
tcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagttta |
675 |
Q |
| |
|
| |||| ||||||||||||| |||| | |||||||||||| ||||||| |||| ||||||||||||||||| | ||||||||||||||| | |||||| |
|
|
| T |
5467675 |
taaactaaccaatttgtattttctagacctacttgagaatcattgggaaggtactatgacaaatattcatttccacaatctcacaaacctactcagttta |
5467774 |
T |
 |
| Q |
676 |
actatgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaag |
775 |
Q |
| |
|
|| ||||||||||| | ||| |||||||||||||| |||||||||||||||||||| |||||||| |||| |||| ||||| | ||||||||| |
|
|
| T |
5467775 |
tctgtgtcatctaaacaaaactcatttgctttgaaagtgacaaatgactgggttccaacttttaagggtttgtaccatgttgaaatttgtaattgtcaag |
5467874 |
T |
 |
| Q |
776 |
ttggcccagcatttcctcactgg |
798 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
5467875 |
ttggcccagcatttcctaactgg |
5467897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 5110496 - 5110650
Alignment:
| Q |
66 |
gtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatcc |
165 |
Q |
| |
|
|||||||||||||| ||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
5110496 |
gtttaatagcgggtatggatatctgcgggtgtggataccattaaatccgcattcgtatccattaattagcgggtagttaaaaaattcatttattttatcc |
5110595 |
T |
 |
| Q |
166 |
gtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
5110596 |
atggatatccattaaggtatccgctctgtgtccgtggcagattttatccgcggat |
5110650 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 5938947 - 5939119
Alignment:
| Q |
48 |
atttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaa |
147 |
Q |
| |
|
||||| ||||| |||| |||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5938947 |
atttatgtaatatactcggtttaatagcgggtatggatatccgcgggtgtagataccattaaatccgcatttgtatccattaattagcgggtagttaaaa |
5939046 |
T |
 |
| Q |
148 |
tatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| |||||| |||||||| ||||||||||| |||||| |
|
|
| T |
5939047 |
aatccatttattatatccatgaatatccattaaggtattcgctccatgtccgtgacggattttatctacggat |
5939119 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 5704842 - 5705039
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| |||||| |||| |||||||||| | | | |||| | ||||| |||||||||||||||| |||||||| |
|
|
| T |
5704842 |
taggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcagatatgaatatttgcgggtgtggataccattaaatccacatccgta |
5704941 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
5704942 |
tccattaattagcggatagttaaaaaatccatttattttatccacggatatacattaaggtatccgttccgtgcccgtggcggattttatccgcggat |
5705039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 45151123 - 45150940
Alignment:
| Q |
24 |
aggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtat |
123 |
Q |
| |
|
||||||||||| | ||| ||| |||||| |||||| |||| |||||||||||| | ||||||| | ||||| ||||||||||||||||||||| |||| |
|
|
| T |
45151123 |
aggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcggatatggatatctgtgggtgtggataccattaaatccgcatctgtat |
45151024 |
T |
 |
| Q |
124 |
ccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggat |
207 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||||| || || ||||||||||| |
|
|
| T |
45151023 |
ccattaattagcggatagttaaaaaatccgtttattttatccatggatatctattaaggtatccgttctatgcccgtggcggat |
45150940 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 31575802 - 31575637
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| ||| |||||||||||| | ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31575802 |
tatttatgtaatttacttggtttaatagcggatatggatatccgctggtgtggatacaattaaatccgcatccgtatccattaattagcgggtagttaca |
31575703 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttat |
212 |
Q |
| |
|
| || | |||||||||||| || |||||||||||| ||||| ||| ||||| |||||||||||||| |
|
|
| T |
31575702 |
aaattcgtttattttatccatgcatatccattaagatatccactctgtgtcagtggcggattttat |
31575637 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 13626155 - 13626007
Alignment:
| Q |
66 |
gtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatcc |
165 |
Q |
| |
|
||||||||| |||| |||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
13626155 |
gtttaatagagggtatggatattcgcgggtgtagataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctgtttattttatcc |
13626056 |
T |
 |
| Q |
166 |
gtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
| |||||||||||||||||||||| || | |||||| | ||||||||| |
|
|
| T |
13626055 |
atagatatccattaaggtatccgcttcgcgcccgtggtgaattttatcc |
13626007 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 307 - 746
Target Start/End: Original strand, 5477041 - 5477477
Alignment:
| Q |
307 |
ggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcatt |
406 |
Q |
| |
|
||||||| ||| ||| |||| ||||| ||||||||| | ||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
5477041 |
ggtgatataaccgaactgatagaggcattgtcttgtagcaaccaaagcctagagtttttagatttaaggtttaatcaactaactgggaaattgcctcatt |
5477140 |
T |
 |
| Q |
407 |
ctttagggcaatttaacagtttgctctttcttgatctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccagcctctataggaaa |
506 |
Q |
| |
|
| |||||| |||||| |||||| | | ||||||| | |||| ||| | || || |||||| | |||||||||| ||||||| | ||||||||||| |
|
|
| T |
5477141 |
cattagggaaatttactagtttgttttatcttgatttgtcaacaaacccggtgaactcacacac---gatctcaggtcctataccaacatctataggaaa |
5477237 |
T |
 |
| Q |
507 |
cttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattatctaaaacta |
606 |
Q |
| |
|
|||||||||||| |||||||| | || || |||| | ||| ||| | |||||| ||| | || || |||| ||||||||| ||| |||| | ||| |
|
|
| T |
5477238 |
cttatcaaatcttgtttatctgaatgtggacaacaacaagttgaatgggaaaattccggaaagcattggtaaactaaccaatttgcattctctacaccta |
5477337 |
T |
 |
| Q |
607 |
cttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataacacatttgctt |
706 |
Q |
| |
|
| |||||||||||||| |||| | | ||||| | ||||| |||||||||||||||| || |||| || ||||||||||||| || || || ||| |
|
|
| T |
5477338 |
cgcgagaattattgggaaggtacacttacaaacttacatttccataatctcacaaacctggtatatttatctgtgtcatctaaaaaaaattcactttctt |
5477437 |
T |
 |
| Q |
707 |
tgaaattgacaaatgactgggttccaccttttaagtattt |
746 |
Q |
| |
|
| ||| |||| ||||| |||||||||||||||||| |||| |
|
|
| T |
5477438 |
tcaaagtgacgaatgattgggttccaccttttaagaattt |
5477477 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 13807790 - 13807920
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| ||||| ||| |||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
13807790 |
taggaagttgaatgatattgaggttatttatataatttacttggtttaatagcgggtatggatatccgcgggtgtggataccattaaatccacatccgta |
13807889 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatcca |
153 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |
|
|
| T |
13807890 |
tccattaataagcgggtagttaaaaaatcca |
13807920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 14701489 - 14701577
Alignment:
| Q |
98 |
ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc |
186 |
Q |
| |
|
||||||||| |||||||||||||||||||| || | ||| ||||| |||| ||| |||||||||||| || ||||| |||||| |||| |
|
|
| T |
14701489 |
ggataccatcaaatccgcatccgtatccatcaaatcacggatagttgaaatgtccgtttattttatccatgaatatctattaagatatc |
14701577 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 22218 - 22416
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
22218 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcaggtgcggatatccgcgggtgcggataccattaaatccgcatccgt |
22317 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22318 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
22416 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 39800331 - 39800133
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
39800331 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgcgggtgcagataccattaaatccgcatccgt |
39800232 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39800231 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
39800133 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 40057165 - 40057293
Alignment:
| Q |
92 |
gggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40057165 |
gggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatctatttattttatccgtagatatccattaaggtatccgctc |
40057264 |
T |
 |
| Q |
192 |
cgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
40057265 |
cgtgtccgtggcggattttatccgcggat |
40057293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 35188440 - 35188312
Alignment:
| Q |
92 |
gggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc |
191 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35188440 |
gggtgtggataccactaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtatccgctc |
35188341 |
T |
 |
| Q |
192 |
cgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||| |
|
|
| T |
35188340 |
cgtgtccgtggcggattttatccgcggat |
35188312 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 39206949 - 39206821
Alignment:
| Q |
92 |
gggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc |
191 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
39206949 |
gggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatccatcgatatccattaaggtatccgctc |
39206850 |
T |
 |
| Q |
192 |
cgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||| |||||||||||||||||| ||||| |
|
|
| T |
39206849 |
tgtgcccgtggcggattttatccgcggat |
39206821 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 3926439 - 3926629
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| |||||| |||| ||| ||||||||| ||||||||| ||||| |||||||||||||||||||||| | |
|
|
| T |
3926439 |
taggaagttgaatgatattgaggttatttatgtaatttactcgattttatagcgggtatggatatccgcgggtgtggataccattaaatccgcatccaca |
3926538 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
||||||||| ||| |||||||||| |||| |||||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
3926539 |
tccattaataagcatgtagttaaaaaatccgtttattttatccatagatatccattaagatatccgctccgtgcctgtggcggattttatc |
3926629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 42878832 - 42878646
Alignment:
| Q |
27 |
aagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatcca |
126 |
Q |
| |
|
|||||||| || ||||||| |||||| |||||| |||| |||||||||||||| ||||||||| ||||| |||||||||||||||||||| | |||||| |
|
|
| T |
42878832 |
aagttgaatggtattaaggttatttatgtaatttactcggtttaatagcgggtatggatatccgcgggtgtggataccattaaatccgcattcatatcca |
42878733 |
T |
 |
| Q |
127 |
ttaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
||||||| ||||| |||||| |||| ||||||||||| ||||||| |||||| ||||| |||| ||||| ||| |||| |||||| |
|
|
| T |
42878732 |
ttaattaatgggtatttaaaaaatccgtttattttatctatggatattcattaaagtatctgctctgtgtctgtgacggagtttatc |
42878646 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 23429510 - 23429677
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| | || || |||| | ||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
23429510 |
tatttatgtaatttactcagtttaatagcgggt----aaatgcg--ggtgtgaataccattaaatccgcatctgtatccattaattagcgagtagttaaa |
23429603 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
| |||| ||||| |||| | ||||||||||||||| |||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
23429604 |
aaatccgtttatgttattcatggatatccattaagatatccgttccgtgtccgtagcggattttatctacggat |
23429677 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 33742531 - 33742404
Alignment:
| Q |
92 |
gggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc |
191 |
Q |
| |
|
||||| |||||| |||| ||||||||| |||||||||||||| || ||||||||| ||||||||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
33742531 |
gggtgtggatacaattacatccgcatctgtatccattaattaacga-tagttaaaaaatccatttattttatccatggatatcaattaaggtatccactc |
33742433 |
T |
 |
| Q |
192 |
cgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
| ||||||||| ||||||||||||||||| |
|
|
| T |
33742432 |
catgtccgtggaggattttatccacggat |
33742404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 39886957 - 39887104
Alignment:
| Q |
69 |
taatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtg |
168 |
Q |
| |
|
||||||||||| |||||| ||| ||||| |||||||| ||||| ||||| |||||||||||||||| ||||||| |||||| | |||||||||||| || |
|
|
| T |
39886957 |
taatagcgggtacggatacccgcgggtgtagataccatgaaatctgcatctgtatccattaattagcaggtagttgaaatattcgtttattttatccatg |
39887056 |
T |
 |
| Q |
169 |
gatatccattaaggtatccgctccgtgtccgtggcggattttatccac |
216 |
Q |
| |
|
|||||||||||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
39887057 |
tatatccattaagatatccattctgtgttcgtggcggattttatccac |
39887104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 42837778 - 42837950
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||| |||||| | ||||| |||||| |||||||| |||| || ||||||| ||| ||| |||||||| |
|
|
| T |
42837778 |
tatttatgtaatttactcggtttaatagcgggtatagatatctgcgggtgtggatactattaaatctgcata-gtgtccattatttaacggatagttaaa |
42837876 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
| |||| |||||||||||| | ||||||||||||| ||||||||| ||||| ||||||| |||||||| ||||| |
|
|
| T |
42837877 |
aaatccgtttattttatccatagatatccattaagatatccgctctgtgtctgtggcgggttttatccgcggat |
42837950 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 26621609 - 26621800
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||| |||| |||||||| ||| |||||| | || || ||||||||||||| ||||| || |
|
|
| T |
26621609 |
taggaagttgaaaggtattaaggttatttgtgtaatttactcgatttaatagtaggtatggatatatgcggatggagataccattaaatatgcatctgtg |
26621708 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||||||| | || |||||||||||||| ||||| || ||| |||| |||||||||| |
|
|
| T |
26621709 |
tctgttaattagtgggtagttaaaatatttgtttattttatccatagacatccattaaggtatgcgctctgtatccttggcagattttatcc |
26621800 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 40057130 - 40057175
Alignment:
| Q |
41 |
taaggatatttacgtaattcactcagtttaatagcgggtgcggata |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40057130 |
taaggatatttacgtaattcactcagtttaatagcgggtgcggata |
40057175 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 2209869 - 2209917
Alignment:
| Q |
95 |
tgcggataccattaaatccgcatccgtatccattaattagcgggtagtt |
143 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
2209869 |
tgcgggtaccattaaatctgcatccgtatccattaattagtgggtagtt |
2209917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 33742584 - 33742527
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtg |
80 |
Q |
| |
|
|||||||||||| | ||||||| |||||| |||||| |||| ||||||||||||||| |
|
|
| T |
33742584 |
taggaagttgaatgatattaaggttatttatgtaatttactctgtttaatagcgggtg |
33742527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 25293936 - 25293738
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25293936 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcaggtgcggatatccgcgggtgcggataccattaaatccgcatccgt |
25293837 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25293836 |
atccattaattagcgggtagttaaaatatccatttattttatctgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
25293738 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 31585099 - 31584933
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| | || |||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31585099 |
tatttatgtaatttaatcggtttaatagcgggtatggatatccgcgggtgtggatatcattaaatccgcatccgtatccattaattagcgggtagttaaa |
31585000 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
31584999 |
aaacccatttattttatccatggatatccattaaggtatccgttccgtgtccatggcggattttatc |
31584933 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 29677436 - 29677298
Alignment:
| Q |
82 |
ggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaag |
181 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
29677436 |
ggatatccgcgggtgtggataccattaaatccgcatccgtatccattaatttgcgggtagttaaaaaatccatttattttatccatggatatccattaag |
29677337 |
T |
 |
| Q |
182 |
gtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||| ||||||||||||| || |||||||||| ||||| |
|
|
| T |
29677336 |
gtatcagctccgtgtccgttgcagattttatccgcggat |
29677298 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 11894504 - 11894701
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||||||| |||||| |||||| |||| ||||||||| ||| |||||||| ||||| ||||||| |||||||||||||| || |
|
|
| T |
11894504 |
taggaagttgaatgatattaaggttatttatgtaatttactcggtttaatagtcggtatggatatccacgggtgtggataccgttaaatccgcatccata |
11894603 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||| ||||| |||||| ||||| ||||| |
|
|
| T |
11894604 |
tccattaattagcaggtagttaaaaaattcatttattttatccattgatatccattaaggtatccgctccgtgcccgtgacggattatatccgcggat |
11894701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 47141031 - 47141228
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| || |||||| |||||| ||||| |||| ||||||||||||| ||||||||| |||||| ||||||||||||| | || | || |
|
|
| T |
47141031 |
taggaagttgaatggtattaagattatttatttaatttactcgatttaatagcgggtatggatatccgcgggtgctgataccattaaatatgtattccta |
47141130 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||| |||||||| |||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47141131 |
tccattaattaacgggtagtaaaaaaatccgcttattttatccatggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
47141228 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 2191668 - 2191491
Alignment:
| Q |
30 |
ttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccatta |
129 |
Q |
| |
|
|||||| | ||||||| |||||| |||||| | || |||||||||| ||| ||||||| | ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
2191668 |
ttgaaaagtattaaggttatttatgtaatttattcggtttaatagcaggtatggatatctgcgggtgcggataccattaaatctgcatctgtatccatta |
2191569 |
T |
 |
| Q |
130 |
attagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggat |
207 |
Q |
| |
|
|||| | ||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
2191568 |
attaacaggtagataaaatatccgtttattttatccatggatatccattaaagtatccgctccatatccgtggcggat |
2191491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 15378980 - 15379177
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatcc--- |
119 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||| ||||| ||||||||||||| ||||||| | ||||| |||||| |||||||| |||||| |
|
|
| T |
15378980 |
taggaagttgaaaggtattaaggttatttatgtaatttactcaatttaatagcgggtatggatatctgcgggtgtggatactattaaatctgcatccgta |
15379079 |
T |
 |
| Q |
120 |
---gtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||| ||| |||| |||||| || |||||||||||| |
|
|
| T |
15379080 |
tccgtatccattaattagcgggcagttaaaatatccgtttatttgatccatggatatccattaaaatatatgctcggtgtccatgacggattttatcc |
15379177 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 48378969 - 48378772
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||| | |||| | |||||||||||||| |||| |||| |||| ||| | | ||| |||||||||||||| ||| |
|
|
| T |
48378969 |
taggaagttgaatgatattgaggttattgatgtaacttactcagtttaatagagggtatggatgtccgcgggcgtgaatatcattaaatccgcatatgta |
48378870 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
48378869 |
tccattaattagcgggtagttaaaaaatccgtttattttatccatggatattcattaagctatccgctccgtgcccgtgatggattttatccgcggat |
48378772 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 92 - 214
Target Start/End: Original strand, 25987661 - 25987783
Alignment:
| Q |
92 |
gggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc |
191 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||||||||| ||| |
|
|
| T |
25987661 |
gggtgtggataccattaaatccacatttgtatccattaattagcgggtagttaaaaaattcatttattttatccatagatatccattaaggtatctgctt |
25987760 |
T |
 |
| Q |
192 |
cgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|||| | ||| |||||| ||||| |
|
|
| T |
25987761 |
cgtgcctgtgacggattatatcc |
25987783 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 38264196 - 38264075
Alignment:
| Q |
39 |
attaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcggg |
138 |
Q |
| |
|
||||||| |||||| |||||| | | |||||||||||||| |||||| | |||||||||||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
38264196 |
attaaggttatttatgtaatttaattggtttaatagcgggtatagatatctgcgggtgcggataccattaaattcacatccatatccattaattagcggg |
38264097 |
T |
 |
| Q |
139 |
tagttaaaatatccatttattt |
160 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
38264096 |
tagttaaaatatccatttattt |
38264075 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 17562603 - 17562520
Alignment:
| Q |
137 |
ggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
17562603 |
ggtagttaaaaaatttatttattttatctatggatatccattaaggtatccgctccgtgtccatggcagattttatccgcggat |
17562520 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 42507372 - 42507314
Alignment:
| Q |
154 |
tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttat |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
42507372 |
tttattttatccatggatatccattaaggtatccgctccgtgtcagtggcagattttat |
42507314 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 36728618 - 36728552
Alignment:
| Q |
154 |
tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||||||||||| || || ||||| ||| ||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
36728618 |
tttattttatccatgtatgtccatgaagatatccgctccgtgtctgtggcggattttatccgcggat |
36728552 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 52252893 - 52253013
Alignment:
| Q |
100 |
ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg |
199 |
Q |
| |
|
||||||| | ||| |||| ||||| |||||||||| ||||| ||||||| |||||||||||| || |||| ||||||||||||| || ||||||| |
|
|
| T |
52252893 |
ataccatgatatctgcattcgtatttattaattagcatatagttgaaatatctatttattttatctatgaatatttattaaggtatccgttctgtgtccg |
52252992 |
T |
 |
| Q |
200 |
tggcggattttatccacggat |
220 |
Q |
| |
|
|| | ||||||||||| |||| |
|
|
| T |
52252993 |
tgacagattttatccatggat |
52253013 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0634 (Bit Score: 179; Significance: 4e-96; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 9157 - 8959
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9157 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaataacgggtgcggatatccgcgggtgcggataccattaaatcagcatccgt |
9058 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9057 |
atccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
8959 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 4e-96; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 12149228 - 12149426
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
12149228 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaataacgggtgcggatatccgcgggtgcggataccattaaatcagcatccgt |
12149327 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12149328 |
atccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
12149426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 27926519 - 27926322
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| || ||| ||| ||||||| ||||| | || ||||||||||| | |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27926519 |
taggaagttgaatggtattgaggttatttacataatttattcggtttaatagcgcatatagatatccgcatgtgtggataccattaaatccgcatccgta |
27926420 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27926419 |
tccattaattagcgggtagttaaaaaatctatttattttatccatggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
27926322 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 25 - 220
Target Start/End: Complemental strand, 25874587 - 25874390
Alignment:
| Q |
25 |
ggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatc |
124 |
Q |
| |
|
|||||||||| | ||| ||| |||||| ||||| | || |||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
25874587 |
ggaagttgaatgatattgaggttatttatgtaatatattcggtttaataacgggtatggatatccgcgggtgtggataccattaaatccgcatccgtatc |
25874488 |
T |
 |
| Q |
125 |
cattaattagcgggtagttaaaatatccatttattt--tatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
25874487 |
cattaattagcgggtagttaaaaaatccgtttattttatatccatggatatccattaaggtatccgctccgtgctcgtgacggattttatccgcggat |
25874390 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 13826296 - 13826491
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||| | |||||| |||| |||||||||||||| ||||||||| ||||| ||||||||||||||| | |||| || |
|
|
| T |
13826296 |
taggaagttgaatgatattgaggttattaatgtaatttactcggtttaatagcgggtatggatatccgcgggtgtggataccattaaatctgtatccata |
13826395 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacgg |
218 |
Q |
| |
|
|||||||||||||| |||||||||| |||| |||||||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
13826396 |
tccattaattagcgagtagttaaaaaatccgtttattttatccatggatatctattaatgtatctgctccgtgcccgtggcggattttatctacgg |
13826491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 3778862 - 3778666
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||||||| |||||| |||||| |||| ||||||||| || | | ||||||| |||| ||||||| ||||||||||||| ||| |
|
|
| T |
3778862 |
taggaagttgaatgatattaaggttatttatgtaatttactctgtttaatagtgg-tatgaatatccgcgggtatggataccgttaaatccgcatctgta |
3778764 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
3778763 |
tccattaattagcggatagttaaaaaatctgtttattttattcatggatatccattaaggtatccgctccgtgcccgtggcggattttatccgcggat |
3778666 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 21288359 - 21288527
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagtt-aa |
145 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||| ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
21288359 |
tatttatgtaatttacttggtttaatagcgggtatggatatccgcgggtgtggataccattaaatccgcatccctatccattaattagcgggtagttaaa |
21288458 |
T |
 |
| Q |
146 |
aatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|| |||| |||||||||||| | ||||||||||||| ||||||||||||| ||||| || ||||||||| |
|
|
| T |
21288459 |
aaaatccgtttattttatccatagatatccattaagatatccgctccgtgcccgtgacgtattttatcc |
21288527 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 5295482 - 5295649
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| | ||||||||| |||| |||||||||||||| ||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5295482 |
tatttatgtaatttactcagtttaatagcggatatggatatccgcaggtgtagataccattaaatctgcatctgtatccattaattagtgggtagttaaa |
5295581 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
| || | |||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
5295582 |
aaatacgtttattttattcatggatatccattaaggtatccgctccgtgcccgtggtagattttatcc |
5295649 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 48251373 - 48251176
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||| || || ||||||| |||||| ||||| |||| |||||||||||| | |||||| || |||| ||||||||||||||||| ||| | | |
|
|
| T |
48251373 |
taggaagtttaatggtattaaggttatttatctaatttactcggtttaatagcggatatggatatacgcgggtagggataccattaaatccgtatctgca |
48251274 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||| | || |||||||||||||||||||||||| | |||||||||||| ||||| ||||||| |||||| | |||||||||| ||||| |
|
|
| T |
48251273 |
tccattaattagcagttaattaaaatatccatttattttatccatagatatccattaaagtatctgctccgtatccgtgacagattttatccgcggat |
48251176 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 36585012 - 36585104
Alignment:
| Q |
66 |
gtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttat |
158 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
36585012 |
gtttaatagcgggtatggatatccgcgggtgcggataccatttaatctgcatccgtatccattaattagcgggtagataaaatatctatttat |
36585104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 115 - 220
Target Start/End: Original strand, 53208798 - 53208902
Alignment:
| Q |
115 |
catccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|||| ||||||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||||| ||| ||||| ||| |||||||||||| |
|
|
| T |
53208798 |
catctgtatccattaagtaatgggtagttgtaatatccatttattttacccatggatatccattaaggtat-cgcctcgtgttcgtaccggattttatcc |
53208896 |
T |
 |
| Q |
215 |
acggat |
220 |
Q |
| |
|
|||||| |
|
|
| T |
53208897 |
acggat |
53208902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 26749152 - 26749244
Alignment:
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| || | ||||||| | |||||||||| |
|
|
| T |
26749152 |
atccattaaatagcaagtagttgaaatatccatttattttatccattgatatccattaaggtatccactttgagtccgtgacagattttatcc |
26749244 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 27519978 - 27519860
Alignment:
| Q |
67 |
tttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccg |
166 |
Q |
| |
|
||||||| |||| |||||||||| || ||||||| |||| |||||| ||||| ||||||| || || | | |||||||||||| | |||||||||||| |
|
|
| T |
27519978 |
tttaataacgggcacggatatccgcggatgcggatcccatgaaatccacatccatatccataaaataacagctagttaaaatattcgtttattttatcca |
27519879 |
T |
 |
| Q |
167 |
tggatatccattaaggtat |
185 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
27519878 |
tggatgtccattaaagtat |
27519860 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 25022477 - 25022411
Alignment:
| Q |
120 |
gtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc |
186 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||| |||||| || ||||| ||||||||||| |
|
|
| T |
25022477 |
gtatccattaaataacgggtagttaaaatatctatttatattatccatgaatatcaattaaggtatc |
25022411 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 36585102 - 36585147
Alignment:
| Q |
171 |
tatccattaaggtatccgctccgtgtccgtggcggattttatccac |
216 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||| |||||||||||| |
|
|
| T |
36585102 |
tatccattaaagtatccgctccatgtccgtggcagattttatccac |
36585147 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 3e-69; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 40568807 - 40568625
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
40568807 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcgaata----------------ccattaaatccgcatccgt |
40568724 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
40568723 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcgaattttatccgcggat |
40568625 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 36464679 - 36464484
Alignment:
| Q |
30 |
ttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccatta |
129 |
Q |
| |
|
|||||||| ||||||| |||||| |||||| | |||||||||||||| || |||||| | ||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
36464679 |
ttgaaaggtattaaggttatttatgtaatttattcagtttaatagcgagtaaggatatttgcgggtgcggatatcattaaatccgcatccgtatctatta |
36464580 |
T |
 |
| Q |
130 |
attagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggatgcgga |
225 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
36464579 |
attagcggatagttaaaatatccgtttattttatccatggatatccgttaaggtatccgctccgtgtccgtggcggattttatccgcgggtgcgga |
36464484 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 8819169 - 8818979
Alignment:
| Q |
30 |
ttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccatta |
129 |
Q |
| |
|
|||||||| ||||| | |||||| |||||| | | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8819169 |
ttgaaaggtattaatgttatttatgtaatttatttagtttaatagcgggtatggatatccgcgggtgcggataccattaaatccgcatccatatccatta |
8819070 |
T |
 |
| Q |
130 |
attagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||| | | |||||||||||||| |||||||||||| || |||||| |||||||||||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
8819069 |
attaacagatagttaaaatatccgtttattttatccatgaatatccgttaaggtatccgcttcgtgtccgtgacggattttatccgcggat |
8818979 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 19841991 - 19842166
Alignment:
| Q |
39 |
attaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcggg |
138 |
Q |
| |
|
||||||| |||||| |||||| |||| |||||||||| ||| ||||| || ||||| ||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
19841991 |
attaaggttatttatgtaatttactcggtttaatagcaggtattgatattcgcgggtgtggaaaccattaaatccgcatctttatccattaattagcgat |
19842090 |
T |
 |
| Q |
139 |
tagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19842091 |
tagttaaaaaatccgtttattttatccatggatatccattaaggtatccactccgtgtccgtggcggattttatcc |
19842166 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 54 - 219
Target Start/End: Original strand, 22279279 - 22279443
Alignment:
| Q |
54 |
gtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatcca |
153 |
Q |
| |
|
|||||| |||| |||||||||||| | ||||||||| ||||| |||||| |||||||| ||||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
22279279 |
gtaatttactcggtttaatagcggatttggatatccgcgggtgtggatactattaaatctgcatctgtatccattaattaacgggtagttaaaa-atcca |
22279377 |
T |
 |
| Q |
154 |
tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacgga |
219 |
Q |
| |
|
|||||||||||| ||||||||| |||||| ||||| | ||||||| ||||||||||||||| |||| |
|
|
| T |
22279378 |
tttattttatccatggatatcctttaagggatccgtttcgtgtccatggcggattttatccgcgga |
22279443 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 24 - 220
Target Start/End: Original strand, 38951868 - 38952064
Alignment:
| Q |
24 |
aggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtat |
123 |
Q |
| |
|
||||||||||| | ||| ||| |||||| |||||| ||| |||||||||||| | ||||| | ||||| | ||||||||||||||||||| |||| |
|
|
| T |
38951868 |
aggaagttgaatgatattgaggttatttatgtaatttcctcggtttaatagcggatatggataaatgcgggtgtgaataccattaaatccgcatctgtat |
38951967 |
T |
 |
| Q |
124 |
ccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
38951968 |
ccattaattagcgggtagttaaaaaatctgtttattttatccgtgaatatccattaatgtatccgctccgtacctgtggcggattttatccgcggat |
38952064 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 42555582 - 42555762
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| ||| ||||||||||| || |||||| || ||||||||||| |||||||||| ||| | || |
|
|
| T |
42555582 |
taggaagttgaaaggtattaaggatatttatgtaatttacttggtttaatagcgagtatggatattcgtgggtgcggatatcattaaatccacattcata |
42555681 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggc |
203 |
Q |
| |
|
| |||||||||| ||||||||||||||| |||||||||| | | ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
42555682 |
ttcattaattagttggtagttaaaatatctgtttattttattcattgatatccattaaggtatccgctctgtgtctgtggc |
42555762 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 61 - 220
Target Start/End: Original strand, 41041721 - 41041880
Alignment:
| Q |
61 |
actcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattt |
160 |
Q |
| |
|
|||| |||||||||||||| |||| |||| ||||| ||||| |||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
41041721 |
actcggtttaatagcgggtatggatgtccgcgggtgtggatatcattaaattcgcatctgtatctattaattagcgggtagttaaaaaatccatttattt |
41041820 |
T |
 |
| Q |
161 |
tatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||| | |||||||||||||||||||||||||| |||| ||||||||||| ||||| |
|
|
| T |
41041821 |
tatccataaatatccattaaggtatccgctccgtgcccgtaatggattttatccgcggat |
41041880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 40714702 - 40714518
Alignment:
| Q |
27 |
aagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatcca |
126 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||| |||| ||||||||||| || ||||||||| |||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
40714702 |
aagttgaaaggtattaaagttatttatgtaatttactcggtttaatagcgagtatggatatccgcgggtgcggatgccattaaatctgcatctgtatcca |
40714603 |
T |
 |
| Q |
127 |
ttaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttat |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||| |||| | ||| |||||||||| |
|
|
| T |
40714602 |
ctaattag-tggtagttaaaatatccatttattttatcgataaatatccattaatgtatccgcttcgtgcctgtgacggattttat |
40714518 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 51357450 - 51357629
Alignment:
| Q |
30 |
ttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccatta |
129 |
Q |
| |
|
|||||||| ||||||| |||||| |||||| | ||||||||||||||||| ||||||||| ||||| |||||||||||||||||| ||| |||| |
|
|
| T |
51357450 |
ttgaaaggtattaaggttatttatgtaatttattcagtttaatagcgggtatggatatccgtgggtgtggataccattaaatccgc------atcaatta |
51357543 |
T |
 |
| Q |
130 |
attagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcca |
215 |
Q |
| |
|
|||||| | || ||||||||||| |||||||||||| | ||||||||||||||||| ||| | |||| ||||||||||||||||| |
|
|
| T |
51357544 |
attagcagataattaaaatatccgtttattttatccataaatatccattaaggtatctgcttcatgtcagtggcggattttatcca |
51357629 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 43624591 - 43624768
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||||||| |||||| |||||| |||| |||||||||||||| ||||||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
43624591 |
taggaagttgaatgatattaaggttatttatgtaatttactcggtttaatagcgggtatggatatccgcgagtgtggataccat---atccgcatccgta |
43624687 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43624688 |
tccattaattagcgggtagttaaaaaatccgtttgttt----------tatccattaaggtacccgctccgtgtccgtggcggattttatc |
43624768 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 29117275 - 29117393
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| | ||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29117275 |
tatttatgtaatttattcagtttaatagcggaaatggatatccgcggatgcggataccgttaaatccgcatccgtatccattaattagcgggtagttaaa |
29117374 |
T |
 |
| Q |
147 |
atatccatttattttatcc |
165 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
29117375 |
atatccgtttattttatcc |
29117393 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 17120168 - 17119979
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||| |||| |||||| || ||| |||||| |||| |||||||| ||||| ||||||||| | |||||||| ||||||| ||||||| |||| |
|
|
| T |
17120168 |
taggaagttcaaagatattaagattacttatgtaatttactcggtttaatatcgggtatggatatccgcgcgtgcggatgccattaagtccgcattcgta |
17120069 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttat |
212 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||||||| |||| | ||||| ||||||| |||||||| ||| |||||| ||||||||| |
|
|
| T |
17120068 |
tccattaattagcggatagttaaaatattcgtttatttcatccacgaatatctattaaggcatccgctctgtgcccgtggtggattttat |
17119979 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 23627113 - 23627282
Alignment:
| Q |
27 |
aagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatcca |
126 |
Q |
| |
|
||||||||| | ||||||| |||||| |||||| |||| ||||| |||| || | |||| ||||| ||| |||||||||| || |||| ||||||| |
|
|
| T |
23627113 |
aagttgaaaagtattaaggttatttatgtaatttactcggtttagtagcaagtatgcatattcgaggatgcagataccattatatatgcatatgtatcca |
23627212 |
T |
 |
| Q |
127 |
ttaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgt |
196 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||||| || || ||||||||||||||| |||||||| |
|
|
| T |
23627213 |
ttaattagcaggtagttaaaatattcgtttattttatccatgtatttccattaaggtatccactccgtgt |
23627282 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 33340844 - 33341041
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||||||||| ||||| | |||||| || || |||| |||||||| || | ||||||| | |||| | ||||||||||||| ||||||||| |
|
|
| T |
33340844 |
taggaagttgaaaggtattaatgttatttatatattttactctatttaatagtggatatggatatctgcgggtacatataccattaaatctgcatccgta |
33340943 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| | ||| || ||||||||||| | ||||||| | |||||||||||| ||||| |
|
|
| T |
33340944 |
tccattaattagtaggtagttaaaatatccgtttattttatccatagatgtctattaaggtatctatttcgtgtccataacggattttatccgcggat |
33341041 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 47224071 - 47224232
Alignment:
| Q |
50 |
ttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaata |
149 |
Q |
| |
|
|||||||||| ||| | ||||||| || || ||||||||| |||| ||||||| ||||| ||||| | ||||||||| ||| || || || ||||| |
|
|
| T |
47224071 |
ttacgtaatttacttaatttaataacgagtatggatatccgcaggtggaaataccatcaaatctgcatctgcatccattaaatagtggataattgaaata |
47224170 |
T |
 |
| Q |
150 |
tccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggatttta |
211 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||| ||| ||||| || |||||||||| |
|
|
| T |
47224171 |
tccacttattttatctttggatattcattaaggtatttgcttcgtgtttgttgcggatttta |
47224232 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 48747921 - 48747966
Alignment:
| Q |
145 |
aaatatccatttattttatccgtggatatccattaaggtatccgct |
190 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
48747921 |
aaatatccgtttattttatccttggatatccattaaggtattcgct |
48747966 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 50667912 - 50667871
Alignment:
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatc |
164 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
50667912 |
tccattaactagcaagtagttaaaatatccatttattttatc |
50667871 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 27337257 - 27337441
Alignment:
| Q |
22 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgt |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27337257 |
ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggt----------------gcggataccattaaatccgcatccgt |
27337340 |
T |
 |
| Q |
122 |
atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggatg |
221 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27337341 |
atctattaattagcgggtagttaaaatatccatttattttattcgtggatatccattaaggtatccgctccgtgtccgtggcgga---tatccacggatg |
27337437 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 1052948 - 1052754
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccg-agg--gtgcggataccattaaatccgcatcc |
119 |
Q |
| |
|
|||||| |||||||| ||||||| |||||| |||||| | || || ||||||||||| ||||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
1052948 |
taggaatttgaaaggtattaaggttatttatgtaatttattcggtataatagcgggtatggatatccgcaggaggtgcggataccattaaatccacatcc |
1052849 |
T |
 |
| Q |
120 |
gtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1052848 |
ttatccattaattagcgggtagttaaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtccgtggcgaattttatcc |
1052754 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 33189563 - 33189760
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||| |||||| || |||||||||||||| |||||| |||| || ||||| ||| | | |||||| ||||| |||||||||| ||| |||||| ||| |
|
|
| T |
33189563 |
taggatgttgaatggtattaaggatatttatgtaatttactctgtgtaataacggatatgtttatccgcgggtgtggataccattgaattcgcatctgta |
33189662 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33189663 |
tccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat |
33189760 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 36299048 - 36299238
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||| |||||| | ||||||| |||||| |||||| | | |||||||||||||| | ||||||| ||||||||||||||||||||| ||| ||| |
|
|
| T |
36299048 |
taggaatttgaaatgtattaaggttatttatgtaatttattg-gtttaatagcgggtatgaatatccgtgggtgcggataccattaaatcaacatttgta |
36299146 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
36299147 |
tccattaattagcgggtagttaaaatattcatttattttatccatggatatccattaagatatccgctccgtgtccgtggcagattttatcc |
36299238 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 7767255 - 7767429
Alignment:
| Q |
39 |
attaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcggg |
138 |
Q |
| |
|
||||||| |||||| |||||| |||||||||||||| |||| ||||||||| |||| ||||||||||||||| | |||||| |||||||||||| ||| |
|
|
| T |
7767255 |
attaaggttatttatgtaatttactcagtttaatagtgggtatggatatccgcaggtgtggataccattaaatctgaatccgtgtccattaattaggggg |
7767354 |
T |
 |
| Q |
139 |
tagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
||||||||| |||| |||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
7767355 |
tagttaaaaaatccgtttattttattcatggatatccattaaagtatccgctccatgtccgtggcggattttatc |
7767429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 11039071 - 11038881
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||| ||| || |||||| |||||| | |||| |||| |||||||||| ||| ||||||| | ||||| ||||||||||||||||| |||| || |
|
|
| T |
11039071 |
taggaagtggaatggtattaagcttatttatgaaatttactcggtttaatagccggtatggatatctgcgggtgtggataccattaaatccgtatccata |
11038972 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
11038971 |
ttcattaattagcgggtagttaaaaaatccgtttattttatccatgaatatccattaaggtatctgctccatgtccgtggcggattttatc |
11038881 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 47925083 - 47925276
Alignment:
| Q |
26 |
gaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatcc |
125 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| || | | |||||||||||||| |||||| | |||||||||||||||||||||| | | ||||||| |
|
|
| T |
47925083 |
gaagttgaaagatattaaggttatttatgtattt-agtaagtttaatagcgggcatggatatttgtgggtgcggataccattaaatccactttcgtatcc |
47925181 |
T |
 |
| Q |
126 |
attaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
47925182 |
attaattaatgggtagttaaaatatctatttattttatctaaggatatccattaaggtatccgttccgtgtccgtggcggattttatccgcggat |
47925276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 2943936 - 2943746
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||||||| | ||||| | |||||| |||||| |||| |||||||||||| | ||||||||| || || ||||||||||||||| |||| |||| |
|
|
| T |
2943936 |
taggaagttgaaatgtattaatgttatttatgtaatttactcggtttaatagcggatatggatatccgcggatgtggataccattaaatctgcattcgta |
2943837 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
2943836 |
tc-attaattagcgggtagttaaaatatccgtttattttacccataaatatccattaaggtattcgctccgtatccgtaacggattttatcc |
2943746 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 23 - 207
Target Start/End: Original strand, 5973233 - 5973417
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| |||||| |||| ||||||||||||| ||||||||| ||||| | ||||||||||||||||||| ||| |
|
|
| T |
5973233 |
taggaagttgaatgatattgaggttatttatgtaatttactcgatttaatagcgggtatggatatccgcgggtgtgaataccattaaatccgcatctgta |
5973332 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggat |
207 |
Q |
| |
|
|||||||||||| || ||||||||| || | ||||||||||| ||||| |||||||||||||||| |||||| || |||||||| |
|
|
| T |
5973333 |
tccattaattagtggatagttaaaaaattcgtttattttatcaatggatttccattaaggtatccgttccgtgcccatggcggat |
5973417 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 30541371 - 30541196
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||||| |||| || |||||| ||| | |||| |||||||| ||| | ||||||| | |||||| ||||||||||||| |||||| || |
|
|
| T |
30541371 |
taggaagttgaaagttatta-ggttatttatgtatcttactcggtttaataacggatatggatatctgcgggtgcaaataccattaaatcggcatccata |
30541273 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
30541272 |
tccattaattagcgggtagttaaaatattcgtttattttatccatggatatccattaaggtatccgctccatgtccg |
30541196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 23809560 - 23809405
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| |||||| |||| |||||||||| || ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
23809560 |
taggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcaagtatggatatccgcgggtgtggataccattaaatccgcatccgta |
23809461 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccatt |
178 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||||||||| || ||||||||| |
|
|
| T |
23809460 |
tccattaattagcgggtagttaaaaaacctgtttattttatccatgaatatccatt |
23809405 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 47 - 186
Target Start/End: Complemental strand, 38440272 - 38440133
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| |||| ||||||||| |||| ||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38440272 |
tatttatgtaatttactcggtttaatagtgggtatggatatctgcaggtgtggataccatcaaatccgcatccgtatccattaattagcgggtagttaaa |
38440173 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatc |
186 |
Q |
| |
|
| || | ||||||||||| |||||||||||||||||||| |
|
|
| T |
38440172 |
aaattcgtttattttatctatggatatccattaaggtatc |
38440133 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 26 - 194
Target Start/End: Complemental strand, 22519058 - 22518891
Alignment:
| Q |
26 |
gaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatcc |
125 |
Q |
| |
|
||||||||||| |||||| |||||| |||||| | ||| ||||||| || || ||||||| | | |||||||||||||||| || ||||||||||| |
|
|
| T |
22519058 |
gaagttgaaagatattaagtttatttatgtaatttattcaatttaataacgtgtatggatatctgctgatgcggataccattaaacccacatccgtatcc |
22518959 |
T |
 |
| Q |
126 |
attaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt |
194 |
Q |
| |
|
||| ||| || |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
22518958 |
att-atttgcaggtagttaaaatatttgtttattttatctatggatatccattaaggtatttgctccgt |
22518891 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 43427129 - 43427061
Alignment:
| Q |
142 |
ttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggatttt |
210 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||||||||||||| || | || ||||||||| |
|
|
| T |
43427129 |
ttaaaatatccatttattttattcatggatgtccattaaggtatccgctccatgcctgttgcggatttt |
43427061 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 9e-60; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 47 - 220
Target Start/End: Original strand, 7622571 - 7622744
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7622571 |
tatttacttaatttactcggtttaatagcgggtatggatatccgcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtaaataaa |
7622670 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
7622671 |
aaatccgtttattttatccatggatatccattaaggtatccgctccgcgtccgtggcggattttatccgcggat |
7622744 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 641914 - 641724
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||||| |||| || |||||| |||||| ||||||||||||||||| | ||||||||| || ||||| ||||||||||||| ||| ||| |
|
|
| T |
641914 |
taggaagttgaaagttatta-ggttatttatgtaatttactcagtttaatagcggatatggatatccgcggatgcggttaccattaaatcctcatatgta |
641816 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
641815 |
tccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaaaatatccgctccgtgtccgtggtgaattttatcc |
641724 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 54 - 214
Target Start/End: Complemental strand, 35167140 - 35166981
Alignment:
| Q |
54 |
gtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatcca |
153 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35167140 |
gtaatttactcagtttagtagcgggtatggatatccgcgg-tgcagataccattaaatccacatccgtatcaattaattagcgggtagttaaaatatccg |
35167042 |
T |
 |
| Q |
154 |
tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
35167041 |
tttattttatccatggatatctattaaggtatccgctttgtgtctgtggtggattttatcc |
35166981 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 10408825 - 10408637
Alignment:
| Q |
25 |
ggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatc |
124 |
Q |
| |
|
|||||||||| || ||||| | |||||| |||||| |||| ||||||||| |||| ||||||| | || ||||||| ||| |||||| ||||| ||||| |
|
|
| T |
10408825 |
ggaagttgaatggtattaacgttatttatgtaatttactcggtttaatagtgggtatggatatctgcggatgcggatgccaataaatctgcatctgtatc |
10408726 |
T |
 |
| Q |
125 |
cattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatc |
213 |
Q |
| |
|
| || ||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10408725 |
tactatttagcgggtagttgaaatatccgtttattttatccatgaatatccattaaggtatccgctccgtttccgtggcggattttatc |
10408637 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 28582409 - 28582587
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||||||||| || || |||||| |||||| | | ||||||||||| || ||||||| ||||||| |||||| |||||||||| || ||| |
|
|
| T |
28582409 |
taggaagttgaaaggtatcaaaattatttatgtaatttattttgtttaatagcgagtatggatatctgagggtgtggatactattaaatccgtatttgta |
28582508 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtg |
201 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28582509 |
tccactaattaacgggtagttaaaatatccgtttattttatccatggatatccatcaaggtatccgctccgtgtccgtg |
28582587 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 10788721 - 10788917
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| |||||| | | ||||||||||| | |||| ||| ||||| |||||| ||||||||| ||| ||| |
|
|
| T |
10788721 |
taggaagttgaatgatattgaggttatttatgtaatttagttggtttaatagcgaatatggatctcctcgggtgtggatactattaaatccacatttgta |
10788820 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||| ||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
10788821 |
tccattaattagcaggtagttaaaa-attcgtttattttatccatggatatccattaaggtatccgctccgtgcccgtggcgaattttatccgcggat |
10788917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 8576983 - 8577125
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| ||||| |||| |||||||||||||| |||||||| ||||| ||||||||||||||| ||||| ||| |
|
|
| T |
8576983 |
taggaagttgaatgatattgaggttatttatataatttactcggtttaatagcgggtatggatatccacgggtgtggataccattaaatctgcatctgta |
8577082 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatcc |
165 |
Q |
| |
|
||||||||||| ||| | ||||||| | || |||||||||||| |
|
|
| T |
8577083 |
tccattaattaacggttggttaaaaaaaccgtttattttatcc |
8577125 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 5e-55; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 8227126 - 8226929
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| |||||| |||||| |||| |||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
8227126 |
taggaagttgaatgatattgaggttatttatgtaatttactcggtttaatagcgggtatgaatatccgcgggtgtggataccattaaatccgcatccgta |
8227027 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
|| |||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| ||||||| ||||| |||||||||||| ||||| |
|
|
| T |
8227026 |
tctattaattagcgggtagttaaaagatccgtttattttatccatgtatatccattaaggtatccactccgtgcccgtgacggattttatccgcggat |
8226929 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 7987084 - 7986897
Alignment:
| Q |
27 |
aagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatcca |
126 |
Q |
| |
|
|||||||| || ||||||| |||||| |||||| | || |||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
7987084 |
aagttgaatggtattaaggttatttatgtaatttattcggtttaatagcgggtatggatatccgcgggtgtgaataccattaaatccgcatccgtatcca |
7986985 |
T |
 |
| Q |
127 |
ttaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
||||||||| ||||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7986984 |
ttaattagcaggtagttgacaaatccgtttattttatccatggatatccattaaggtatccgctccatgtccgtagcggattttatcc |
7986897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 28211800 - 28211598
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||| ||| ||||||||||| | ||||||| | ||||| |||||| ||||||||||||| |||| |
|
|
| T |
28211800 |
taggaagttgaaaggtattaaggttatttatgtaatttacttggtttaatagcgaatatggatatctgcgggtgtggatactattaaatccgcattcgta |
28211701 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggatgc |
222 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||| |||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
28211700 |
tccattaattagtgggtagttaaaatatccgtttattttatccatagatatccattaaagtatctgctctgtgtccgtggcggattttatccgcgggtgc |
28211601 |
T |
 |
| Q |
223 |
gga |
225 |
Q |
| |
|
||| |
|
|
| T |
28211600 |
gga |
28211598 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 9762812 - 9762621
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||||||| |||||| |||||| | || |||||||||| || |||||||||||| || ||||||||| |||||||||||| || |
|
|
| T |
9762812 |
taggaagttgaatgatattaaggttatttatgtaatttattcgatttaatagcgagtatggatatccgaggatgtggataccatcaaatccgcatccata |
9762713 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9762712 |
tccattaattagcaggtagttaaaaaatctgtttattttatccatggatatccattaaggtatccgctccgtgcccgtggcggattttatcc |
9762621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 31006277 - 31006470
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||| ||||| || ||||| | |||||| |||||||||| |||||||||| | | |||||| | |||||| |||||| ||||||||| | ||| |
|
|
| T |
31006277 |
taggaatttgaatggtattaaagttatttatataattcactcggtttaatagctgatatggatatttgtgggtgcagataccgttaaatccgtgttcgtg |
31006376 |
T |
 |
| Q |
123 |
tccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccac |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
31006377 |
tccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaagatatccgctccatgtccgtggcggattttatccac |
31006470 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 36582779 - 36582620
Alignment:
| Q |
61 |
actcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattt |
160 |
Q |
| |
|
|||| |||||||| ||||| |||||| || ||||| | |||| |||||||||||||||||||||||||||||| || ||||||||| |||| ||||||| |
|
|
| T |
36582779 |
actcggtttaataacgggtatggatattcgcgggtgtgtatactattaaatccgcatccgtatccattaattagtggatagttaaaaaatccgtttattt |
36582680 |
T |
 |
| Q |
161 |
tatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||| | ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
36582679 |
tattcatggatatccattaagatatccgctccgtgttcgtggcggattttatccgcggat |
36582620 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 39 - 207
Target Start/End: Complemental strand, 7968331 - 7968163
Alignment:
| Q |
39 |
attaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcggg |
138 |
Q |
| |
|
||||||| |||||| |||||| | || ||||||||||| | |||||| || ||||| | |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7968331 |
attaaggttatttatgtaatttattcggtttaatagcgaatatggatatacgcgggtgtgaataccattaaatccgcatgcgtatccattaattagcggg |
7968232 |
T |
 |
| Q |
139 |
tagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggat |
207 |
Q |
| |
|
||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
7968231 |
tagttgaaaaatccgtttattttatccatggatatccattaaggtatccgctacgtatccgtagcggat |
7968163 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 11481662 - 11481860
Alignment:
| Q |
23 |
taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgta |
122 |
Q |
| |
|
|||||||||||| | ||| ||| ||||||| ||||| |||| |||||||||||||| |||||| || || || ||||||| |||||||| ||||| || |
|
|
| T |
11481662 |
taggaagttgaatgatattgaggttatttacataatttactcggtttaatagcgggtatggatattcgcggatgtggataccgttaaatccacatccata |
11481761 |
T |
 |
| Q |
123 |
tccattaattagcgggtagtt-aaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat |
220 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||||||||||| ||||||| ||| || ||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
11481762 |
tccattaattagcaagtagttaaaaaaatccgtttattttatcgatggatattcatcaaagtatccgctccgtacccgtggcagattttatccacggat |
11481860 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 6870415 - 6870294
Alignment:
| Q |
94 |
gtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccg |
193 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||||| |||||||||||| ||| |||||||||||| ||||||||||||||| |||||| || | |
|
|
| T |
6870415 |
gtgcggataccattaaatctgcatatgtatcaattaattaacgggtagttaaattatatgtttattttatccatggatatccattaagatatccgttctg |
6870316 |
T |
 |
| Q |
194 |
tgtccgtggcggattttatcca |
215 |
Q |
| |
|
| ||| || |||||||||||| |
|
|
| T |
6870315 |
tatccttgaaggattttatcca |
6870294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 6807 - 6640
Alignment:
| Q |
47 |
tatttacgtaattcactcagtttaatagcgggtgcggatatccgagggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaa |
146 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||| | |||||| ||||| ||||||||||||||||||||| |||||||||||||| || |||||| | |
|
|
| T |
6807 |
tatttatgtaatttactcggtttaatagcgggtatgaatatccacgggtgtggataccattaaatccgcatctgtatccattaattaatggttagttaga |
6708 |
T |
 |
| Q |
147 |
atatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc |
214 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||| ||| || |||||| ||||| |||||||||||| |
|
|
| T |
6707 |
aaatccatttattttatccatggatattcattaagatattcgttccgtgcccgtgacggattttatcc |
6640 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 66858 - 66980
Alignment:
| Q |
98 |
ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc |
197 |
Q |
| |
|
|||||||||||||| | |||| ||| ||| |||||| |||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
66858 |
ggataccattaaatatgtatccatattcatcaattagagggtagataaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtc |
66957 |
T |
 |
| Q |
198 |
cgtggcggattttatccacggat |
220 |
Q |
| |
|
||| | |||||||||||||||| |
|
|
| T |
66958 |
tgtgacagattttatccacggat |
66980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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