View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_high_9 (Length: 371)
Name: NF13279_high_9
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 43560335 - 43559972
Alignment:
| Q |
1 |
tgaatccaaacatatttcttccgttacgaaatgaatttcnnnnnnngaacattacaggtgggctcaaatagcagcacaattaccagggagaacagataat |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560335 |
tgaatccaaacatatttcttctgttacgaaatgaatttctttttttgaacattacaggtgggctcaaatagcagcacaattaccagggagaacagataat |
43560236 |
T |
|
| Q |
101 |
gaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaacaacacacaagcctcttacagaagcatatcttaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560235 |
gaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaacaacacacaagcctcttacagaagcatatcttaagg |
43560136 |
T |
|
| Q |
201 |
aagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43560135 |
aagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataactgattcgagttactatga |
43560036 |
T |
|
| Q |
301 |
tgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttg |
364 |
Q |
| |
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| T |
43560035 |
tgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttg |
43559972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 218 - 341
Target Start/End: Complemental strand, 1992697 - 1992574
Alignment:
| Q |
218 |
gaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaacag |
317 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1992697 |
gaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtttaacag |
1992598 |
T |
|
| Q |
318 |
aagcttcaagagaaattttcacca |
341 |
Q |
| |
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|
| T |
1992597 |
aagcttcaagagaaattttcacca |
1992574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 34626516 - 34626408
Alignment:
| Q |
55 |
caggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaaggg |
154 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| |||| |||||||| || | || |||||| |
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| T |
34626516 |
caggtgggctcaaattgcagcacaattaccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaaggg |
34626417 |
T |
|
| Q |
155 |
attgatcca |
163 |
Q |
| |
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||||||||| |
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|
| T |
34626416 |
attgatcca |
34626408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 51044664 - 51044772
Alignment:
| Q |
55 |
caggtgggctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaaggg |
154 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||||| |||||||| |||| |||||||| || | || |||||| |
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| T |
51044664 |
caggtgggctcaaattgcatcacaattaccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaaggg |
51044763 |
T |
|
| Q |
155 |
attgatcca |
163 |
Q |
| |
|
||||||||| |
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|
| T |
51044764 |
attgatcca |
51044772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 41830848 - 41830788
Alignment:
| Q |
63 |
ctcaaatagcagcacaattaccagggagaacagataatgaaattaaaaacttctggaattc |
123 |
Q |
| |
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||||||||||||||| |||||| || ||||| || |||||||| |||||||| |||||||| |
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|
| T |
41830848 |
ctcaaatagcagcacgattaccgggaagaaccgacaatgaaataaaaaacttttggaattc |
41830788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 102
Target Start/End: Original strand, 34358271 - 34358305
Alignment:
| Q |
68 |
atagcagcacaattaccagggagaacagataatga |
102 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
34358271 |
atagcagcacaattaccaggaagaacagataatga |
34358305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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