View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13279_low_1 (Length: 1172)
Name: NF13279_low_1
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_low_1 |
 | |
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| [»] scaffold0141 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 8356780 - 8356335
Alignment:
| Q |
19 |
aacatgattagaaaaagattgaaacatctgttcttatttctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagcc |
118 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8356780 |
aacatgattagaaaaagattgaagcatttgttcttatttctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatgttgcagcc |
8356681 |
T |
|
| Q |
119 |
ttgtgaagctgaaagaatttgtgctttgcattatttcagatgtttatgattaccatcttctttctcatcttttaatcgcatgaagcatttttagcatttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8356680 |
ttgtgaagctgaaagaatttgtgctttgcattatttcagatgtttatgattaccatcttctttctcatcttttaatcgcatgaagcatttttagcatttt |
8356581 |
T |
|
| Q |
219 |
cagtggcttagtcttactacgtgtttgggttttgtcacctaacttgtgnnnnnnngttcatataatttgtttgttgttacatgaaaggatatattattcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8356580 |
cagtggcttagtcttactacgtgtttgggttttgtcacctaacttgtgtttttttgttcatataatttgtttgttgttacatggaaggatatattattcc |
8356481 |
T |
|
| Q |
319 |
atacttgcaggtagctaatagcatagtgacaatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagtgagttttgttataaaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8356480 |
atacttgcaggtagctaatagcatagtgacaatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagtgagttttgttataaaa |
8356381 |
T |
|
| Q |
419 |
ccaacgtataacatcattcactgttacattacttatagctgttgag |
464 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8356380 |
ccaacgtataacatcattcattgttacattacttatagctgttgag |
8356335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 466 - 891
Target Start/End: Complemental strand, 8356207 - 8355782
Alignment:
| Q |
466 |
tgattgtacgggtcctccagccttgttcactagtatactgttttcttctatgttgggggttgagaacttatatagggtgatgatgataaatttgagatta |
565 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8356207 |
tgattgtacggttcctccagccttgttcactagtatactgttttcttctatgttgggggttgagaacttatatagggtgatgatgataaatttgagatta |
8356108 |
T |
|
| Q |
566 |
aacaaggtaacattttttccactgttgaacatctgaatgcactttgtgtattgttaatgtgtaaagaaaaatatattattcttgcctcattttaattatc |
665 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8356107 |
aacaaggtcacattttttccactgttgaacatctgaatgcactttgtgtattgttaatgtgtaaagaaaaatatattattcttgcctcattttaattatc |
8356008 |
T |
|
| Q |
666 |
attgctgaattagtttagcatcaaccagaactaaattgtcttctgattttctgtgcaacttttgataaatggattatattatttttatagaatttataag |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
8356007 |
attgctgaattagtttagcatcaaccagaactaaattgtcttctgattttctgtgcaacttttgataaatggattatattatttttgtagaatttataag |
8355908 |
T |
|
| Q |
766 |
atggtagatcaactaaacttaaatagatcacttctccacatcagcatttcccgcttgcctgcctacatgggannnnnnnctttccgtcaccctattagtt |
865 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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|
| T |
8355907 |
atggtagatcaactaaactgaaatagatcacttctccacatcagcatttcccgcttgcctgcctacatgggatttttttcgttccgtcaccctattagtt |
8355808 |
T |
|
| Q |
866 |
actttcaaattcaaaaaagttgtttt |
891 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8355807 |
actttcaaattcaaaaaagttgtttt |
8355782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 887 - 1134
Target Start/End: Complemental strand, 8355761 - 8355517
Alignment:
| Q |
887 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
986 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8355761 |
gttttatgagctggaataactaaataaaaatcgttgaatcaatgtcttgaatttcttcatatatgccaaaacaaaggcgattaccaattcatagtataat |
8355662 |
T |
|
| Q |
987 |
tccccgattaaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
1086 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8355661 |
tccccgattaaaattctctatccaaacacacttttagtgtagtttttattc---tcttagtataatttctcttctatttaggaacatcccaaaagttgtt |
8355565 |
T |
|
| Q |
1087 |
cataacaaagtcactatctttccagactagtggtggcgatctggaaca |
1134 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8355564 |
cataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 995 - 1163
Target Start/End: Original strand, 8482621 - 8482788
Alignment:
| Q |
995 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
1094 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
|
| Q |
1095 |
agtcac-tatctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgt |
1163 |
Q |
| |
|
| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgt |
8482788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 343 - 494
Target Start/End: Complemental strand, 8433316 - 8433167
Alignment:
| Q |
343 |
agtgacaatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagtgagttttgttataaaaccaacgtataacatcattcactgt |
442 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
8433316 |
agtgacaatttgaaaacataaaagaagtcccacatcaaaactttgtgaaatatagtgagtgagttttgttataaaaccaacgtatggtttcattcattgt |
8433217 |
T |
|
| Q |
443 |
tacattacttatagctgttgagctgattgtacgggtcctccagccttgttca |
494 |
Q |
| |
|
|||||| || ||||||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
8433216 |
tacattgct--tagctgttgagttgattgtaagggtcctccagctttgttca |
8433167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 8412862 - 8412762
Alignment:
| Q |
19 |
aacatgattagaaaaagattgaaacatctgttcttatttctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagcc |
118 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
8412862 |
aacataattagaaaaagattgaagcatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcc |
8412763 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
8412762 |
t |
8412762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 8351591 - 8351491
Alignment:
| Q |
19 |
aacatgattagaaaaagattgaaacatctgttcttatttctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagcc |
118 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
8351591 |
aacattattagaaaaagattgaagaatttgttcttattcttgcaaagaaatgatatgttactgaatcgcatgaatcatttttagcattcaaggtgcagcc |
8351492 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
8351491 |
t |
8351491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 8362292 - 8362239
Alignment:
| Q |
349 |
aatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagt |
402 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |
|
|
| T |
8362292 |
aatttgaaaacaaaaaactagtcccacatcggaactttttgaaatatagtgagt |
8362239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 172
Target Start/End: Complemental strand, 8364984 - 8364866
Alignment:
| Q |
51 |
cttatttctacaaggaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagccttgtgaagctgaaagaatttgtgctttgcatt |
150 |
Q |
| |
|
|||||| || |||||||||| || ||||||||| ||||||||||||||||||| || |||||||||||||| | ||||| ||||||||| |||||| |
|
|
| T |
8364984 |
cttattcctgcaaggaaatg-tactttacttaatggcatgaatcatttttagca-ttccagtgcagccttgtgatgttgaaaaaatttgtgc-ttgcatc |
8364888 |
T |
|
| Q |
151 |
atttcagatgtttatgattacc |
172 |
Q |
| |
|
|||| | ||||||||||||||| |
|
|
| T |
8364887 |
atttaaaatgtttatgattacc |
8364866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 363 - 424
Target Start/End: Complemental strand, 8419380 - 8419317
Alignment:
| Q |
363 |
aaacaagtcccacataggaactttgtgaaatatagt--gagtgagttttgttataaaaccaacg |
424 |
Q |
| |
|
||||||| ||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
8419380 |
aaacaagccccacatcggaactttgtaaaatatagtgagagtaagttttgttataaaaccaacg |
8419317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 400
Target Start/End: Complemental strand, 8406402 - 8406351
Alignment:
| Q |
349 |
aatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtga |
400 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
8406402 |
aatttcaaaacaaaaaataagtcccacattggaactttatgaaatatagtga |
8406351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1024 - 1092
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
1024 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
1092 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 8342961 - 8342901
Alignment:
| Q |
363 |
aaacaagtcccacataggaactttgtgaaatatagt--gagtgagttttgttataaaacca |
421 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| |||| ||||||| |||||||||| |
|
|
| T |
8342961 |
aaacaagtcccacatcggaactttgtgaaatttagtgagagtaagttttgctataaaacca |
8342901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 8415771 - 8415718
Alignment:
| Q |
349 |
aatttgaaaacaaaaaacaagtcccacataggaactttgtgaaatatagtgagt |
402 |
Q |
| |
|
||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
8415771 |
aatttcaaaacaaaaaataagccccacatcggaactttatgaaatatagtgagt |
8415718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 9022 - 8943
Alignment:
| Q |
65 |
gaaatgatatgttacttaatcgcatgaatcatttttagcatttatggtgcagccttgtgaagctgaaagaatttgtgctt |
144 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||||||| |
|
|
| T |
9022 |
gaaatgatacgttacttaatggcatgaatcatttttagcattcaaggtgcagccttgtgatgctaaaacaatttgtgctt |
8943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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