View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_low_11 (Length: 348)
Name: NF13279_low_11
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 36999090 - 36998773
Alignment:
| Q |
15 |
atagtatacttttgaagaactcttttttcttctttcaatgtgctagttatgggtcacatttgtgttgtttgttcctaacatgtgttgaactaatttatct |
114 |
Q |
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| T |
36999090 |
atagtatacttttgaagaactcttttttcttctttcaatgtgctagttatgggtcacatttgtgttgtttgttcctaacatgtgttgaactaatttatct |
36998991 |
T |
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| Q |
115 |
ccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggca |
214 |
Q |
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| T |
36998990 |
ccagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggca |
36998891 |
T |
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| Q |
215 |
gcacgtgaacacaatgcggcggtcaaacagacgcccactgctgcggctgggcatatgggtcagnnnnnnnaccccacagggacgactggaacggggaccg |
314 |
Q |
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| T |
36998890 |
gcacgtgaacacaatgcggcggtcaaacagacgaccactgctgcggctgggcatatgggtcagccccaccacaccacagggacgactggaacggggaccg |
36998791 |
T |
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| Q |
315 |
ccacatactctaccactg |
332 |
Q |
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| T |
36998790 |
ccacatactctaccactg |
36998773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 36994182 - 36994070
Alignment:
| Q |
116 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaagaggcaaagatgaaccaggcagagctagataagctggcag |
215 |
Q |
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| T |
36994182 |
cagacagagaagatgacggcacatgatcctttgcaaaaagagatggcaacccaaaagaaagaagaaagggttaaccaggctgagcttgataaagaggcgg |
36994083 |
T |
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| Q |
216 |
cacgtgaacacaa |
228 |
Q |
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| T |
36994082 |
cgcgtgaacacaa |
36994070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 36988407 - 36988346
Alignment:
| Q |
116 |
cagactgagaagatgacagcacgtgatcctgtgcaaaaagagatggcaacccataagaaaga |
177 |
Q |
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||||| ||||||||||| |||| ||||||| ||||||| |||||||||||||| |||||||| |
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| T |
36988407 |
cagacagagaagatgacggcacatgatcctttgcaaaaggagatggcaacccaaaagaaaga |
36988346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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