View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_low_13 (Length: 282)
Name: NF13279_low_13
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 35 - 272
Target Start/End: Complemental strand, 27498527 - 27498290
Alignment:
| Q |
35 |
tcacaaccaatcaaatgaatgattttaaaagttgttacgaataaaatcaaatgtttgtatgattcgatggttatggttatgattgatctacaggccttgg |
134 |
Q |
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| T |
27498527 |
tcacagccaattaaatgaatgattttaaaagttgttacgaataaaatcaaatgtttgtatgatttgatggttatggttatgattgatctacaggccttgg |
27498428 |
T |
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| Q |
135 |
actttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaaatg |
234 |
Q |
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| T |
27498427 |
actttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggaggcatatggtggaaaagcacaatatgtgaaatg |
27498328 |
T |
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| Q |
235 |
gggcaaagatgctggccttaacttgacctctgatgatg |
272 |
Q |
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| T |
27498327 |
gggcaaagatgctggccttaacttgacctctgatgatg |
27498290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 27519954 - 27519762
Alignment:
| Q |
79 |
aatcaaatgtttgtatgattcgatggttatggttatgattgatctacaggccttggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgata |
178 |
Q |
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| T |
27519954 |
aatcaaatgtttgtatgattcgatggttatggttatg-ttgatctacaggccttggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgata |
27519856 |
T |
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| Q |
179 |
ttatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaaatggggcaaagatgctggccttaacttgacctctgatgatg |
272 |
Q |
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| T |
27519855 |
ttatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaaatggggcaaagatgctggccttaacttgacctctgatgatg |
27519762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 27519979 - 27519946
Alignment:
| Q |
18 |
attgtcagcgaatcacgtcacaaccaatcaaatg |
51 |
Q |
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| T |
27519979 |
attgtcagtgaatcacgtcacaaccaatcaaatg |
27519946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 132 - 272
Target Start/End: Original strand, 281366 - 281506
Alignment:
| Q |
132 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
231 |
Q |
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| T |
281366 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaa |
281465 |
T |
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| Q |
232 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
272 |
Q |
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| T |
281466 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
281506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 634486 - 634346
Alignment:
| Q |
132 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
231 |
Q |
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| T |
634486 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaa |
634387 |
T |
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| Q |
232 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
272 |
Q |
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| T |
634386 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
634346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 132 - 272
Target Start/End: Complemental strand, 820289 - 820149
Alignment:
| Q |
132 |
tggactttgtggtaagtgaagcaaagaaatacaaaatcaggctgatattatcattggccaacaattgggagtcatatggtggaaaatcacaatatgtgaa |
231 |
Q |
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| T |
820289 |
tggattttgtggtgagtgaagcaaagaaatacagaatcagactcatattatcattggttaacaattgggaggcatatggtggaaaagcacaatatgtcaa |
820190 |
T |
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| Q |
232 |
atggggcaaagatgctggccttaacttgacctctgatgatg |
272 |
Q |
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| T |
820189 |
gtggggtaatgctgctggccttaacttgacctctgatgatg |
820149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 53029346 - 53029290
Alignment:
| Q |
38 |
caaccaatcaaatgaatgattttaaaagttg-ttacgaataaaatcaaatgtttgta |
93 |
Q |
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| T |
53029346 |
caaccaatcaaatgaatggttttaaaagtagtttaagaataaagtcaaatgtttgta |
53029290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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