View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_low_14 (Length: 275)
Name: NF13279_low_14
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 46214956 - 46215212
Alignment:
| Q |
1 |
acaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaagagggccaagtt |
100 |
Q |
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| T |
46214956 |
acaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaagagggccaagtt |
46215055 |
T |
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| Q |
101 |
tactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaataga |
200 |
Q |
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| T |
46215056 |
tactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaataga |
46215155 |
T |
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| Q |
201 |
tcatagaagggttaagtttaacatactttccggaacttcgatgtcatgtcctcatgt |
257 |
Q |
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| T |
46215156 |
tcatagaagggttaagtttaacatactctccggaacttcgatgtcatgtcctcatgt |
46215212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 18202973 - 18203065
Alignment:
| Q |
134 |
tagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaatagatcatagaagggttaagtttaacatac |
226 |
Q |
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| T |
18202973 |
tagcacctggtgtgaacattcttgcagtttggagtggacttaatggtccatcaagtttactaacatatcataaaagaatgaagtttaacatac |
18203065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 366841 - 366798
Alignment:
| Q |
214 |
aagtttaacatactttccggaacttcgatgtcatgtcctcatgt |
257 |
Q |
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| T |
366841 |
aagtttaacatgttttccggaacttcaatgtcatgtcctcatgt |
366798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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