View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13279_low_20 (Length: 217)

Name: NF13279_low_20
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13279_low_20
NF13279_low_20
[»] chr3 (6 HSPs)
chr3 (15-217)||(27105593-27105795)
chr3 (15-210)||(27098601-27098796)
chr3 (14-205)||(27062811-27063002)
chr3 (14-200)||(27069889-27070075)
chr3 (14-205)||(27085940-27086131)
chr3 (14-200)||(27041467-27041653)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 217
Target Start/End: Complemental strand, 27105795 - 27105593
Alignment:
Q  15 acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105795 acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 27105696  T
Q  115 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105695 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta 27105596  T
Q  215 taa 217  Q
    |||    
T  27105595 taa 27105593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 27098796 - 27098601
Alignment:
Q  15 acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 114  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27098796 acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg 27098697  T
Q  115 aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtgga 210  Q
    |||||| |||||||||||||||||||| |||||||||||||| | || ||||||||| |||||| |||||||||||| ||||||||||||||||||    
T  27098696 aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtgga 27098601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 27063002 - 27062811
Alignment:
Q  14 aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct 113  Q
    ||||||||||||||||||| |  |   ||||| ||||||||| ||||||||||||| || |||| ||| |||  |||||||||||||||||||| ||| |    
T  27063002 aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt 27062903  T
Q  114 gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaa 205  Q
    |||||||   || |||| | |||| ||| ||||||||||||| || ||||| |||| | ||||||  |||||||||||||||||||| ||||    
T  27062902 gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaacgaaa 27062811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 27070075 - 27069889
Alignment:
Q  14 aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct 113  Q
    ||||||||||||||||||| | ||   ||||||||||| ||| |||||| |||||| || | || ||| |||   ||||||||||||||||||| ||| |    
T  27070075 aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt 27069976  T
Q  114 gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaa 200  Q
    |||||||   || |||||| |||| ||| |||||| |||||| || ||||| |||| | ||||||  ||||||||||||||||||||    
T  27069975 gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaa 27069889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 205
Target Start/End: Complemental strand, 27086131 - 27085940
Alignment:
Q  14 aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct 113  Q
    ||||||||||||||||||| | ||   ||||||||||| ||| |||| | |||||| || | || ||| ||   ||||||||| || ||||||| ||| |    
T  27086131 aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt 27086032  T
Q  114 gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaa 205  Q
     |||||| | || |||||  | || ||  ||||||||||||| || |||||||||||| ||| ||  |||||||||||||||||||| ||||    
T  27086031 aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaa 27085940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 27041653 - 27041467
Alignment:
Q  14 aacctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttct 113  Q
    ||||||||||||||||||| | ||   || |||||||| ||| | |||| |||||| || | || ||| ||   ||||||||| || ||||||| ||| |    
T  27041653 aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt 27041554  T
Q  114 gaatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaa 200  Q
     |||||| | || |||||  | || ||  ||||||||||||| || |||||||||||| |||||   ||||| ||||||||||||||    
T  27041553 aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaa 27041467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University