View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13279_low_4 (Length: 805)

Name: NF13279_low_4
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13279_low_4
NF13279_low_4
[»] chr2 (16 HSPs)
chr2 (226-723)||(5482041-5482538)
chr2 (22-204)||(42622357-42622539)
chr2 (225-763)||(5490097-5490635)
chr2 (263-763)||(5495920-5496420)
chr2 (482-767)||(5485384-5485669)
chr2 (273-776)||(5500962-5501462)
chr2 (262-782)||(5467377-5467897)
chr2 (82-204)||(5110528-5110650)
chr2 (82-204)||(5704917-5705039)
chr2 (83-204)||(5938998-5939119)
chr2 (291-730)||(5477041-5477477)
chr2 (83-198)||(13626007-13626122)
chr2 (82-196)||(31575637-31575751)
chr2 (82-191)||(45150940-45151049)
chr2 (82-137)||(13807865-13807920)
chr2 (82-170)||(14701489-14701577)
[»] chr4 (19 HSPs)
chr4 (22-204)||(40568625-40568807)
chr4 (74-209)||(36464484-36464619)
chr4 (74-204)||(8818979-8819109)
chr4 (86-198)||(19842054-19842166)
chr4 (84-204)||(38951944-38952064)
chr4 (82-204)||(41041758-41041880)
chr4 (82-203)||(22279323-22279443)
chr4 (74-149)||(29117318-29117393)
chr4 (79-196)||(17119979-17120096)
chr4 (84-204)||(33340921-33341041)
chr4 (74-196)||(40714518-40714639)
chr4 (76-180)||(23627178-23627282)
chr4 (79-187)||(42555654-42555762)
chr4 (94-197)||(43624675-43624768)
chr4 (100-199)||(51357530-51357629)
chr4 (84-195)||(47224121-47224232)
chr4 (23-76)||(42555582-42555635)
chr4 (129-174)||(48747921-48747966)
chr4 (107-148)||(50667871-50667912)
[»] chr7 (14 HSPs)
chr7 (22-209)||(27337257-27337441)
chr7 (79-198)||(1052754-1052873)
chr7 (82-204)||(33189638-33189760)
chr7 (79-198)||(36299119-36299238)
chr7 (79-204)||(47925151-47925276)
chr7 (82-197)||(11038881-11038996)
chr7 (82-197)||(7767314-7767429)
chr7 (84-183)||(30541196-30541295)
chr7 (74-198)||(2943746-2943869)
chr7 (82-170)||(38440133-38440221)
chr7 (84-191)||(5973310-5973417)
chr7 (82-162)||(23809405-23809485)
chr7 (77-178)||(22518891-22518991)
chr7 (126-194)||(43427061-43427129)
[»] chr5 (12 HSPs)
chr5 (41-204)||(40057130-40057293)
chr5 (22-204)||(39800133-39800331)
chr5 (47-204)||(35188312-35188469)
chr5 (47-204)||(39206821-39206978)
chr5 (23-204)||(33742404-33742584)
chr5 (84-204)||(23429557-23429677)
chr5 (82-197)||(3926514-3926629)
chr5 (83-200)||(39886987-39887104)
chr5 (82-197)||(42878646-42878761)
chr5 (82-204)||(42837829-42837950)
chr5 (74-198)||(26621676-26621800)
chr5 (75-127)||(2209865-2209917)
[»] scaffold0115 (1 HSPs)
scaffold0115 (22-204)||(22218-22416)
[»] chr1 (15 HSPs)
chr1 (22-204)||(25293738-25293936)
chr1 (82-204)||(29677298-29677420)
chr1 (82-197)||(31584933-31585048)
chr1 (43-198)||(25987628-25987783)
chr1 (82-204)||(11894579-11894701)
chr1 (74-204)||(47141098-47141228)
chr1 (74-191)||(2191491-2191608)
chr1 (88-204)||(48378772-48378888)
chr1 (94-198)||(15379073-15379177)
chr1 (74-144)||(38264075-38264145)
chr1 (121-204)||(17562520-17562603)
chr1 (138-196)||(42507314-42507372)
chr1 (54-204)||(52252863-52253013)
chr1 (138-204)||(36728552-36728618)
chr1 (23-77)||(15378980-15379034)
[»] scaffold0634 (1 HSPs)
scaffold0634 (22-204)||(8959-9157)
[»] chr3 (14 HSPs)
chr3 (22-204)||(12149228-12149426)
chr3 (82-204)||(27926322-27926444)
chr3 (82-204)||(25874390-25874514)
chr3 (82-204)||(3778666-3778788)
chr3 (82-198)||(21288410-21288527)
chr3 (82-202)||(13826371-13826491)
chr3 (83-198)||(5295534-5295649)
chr3 (82-204)||(48251176-48251298)
chr3 (74-142)||(36585036-36585104)
chr3 (99-204)||(53208798-53208902)
chr3 (106-198)||(26749152-26749244)
chr3 (74-169)||(27519860-27519955)
chr3 (104-170)||(25022411-25022477)
chr3 (155-200)||(36585102-36585147)
[»] chr6 (7 HSPs)
chr6 (82-204)||(7622622-7622744)
chr6 (74-198)||(641724-641848)
chr6 (83-198)||(35166981-35167096)
chr6 (74-197)||(10408637-10408760)
chr6 (82-204)||(10788796-10788917)
chr6 (82-185)||(28582484-28582587)
chr6 (82-149)||(8577058-8577125)
[»] chr8 (10 HSPs)
chr8 (82-204)||(8226929-8227051)
chr8 (76-198)||(9762621-9762743)
chr8 (82-209)||(28211598-28211725)
chr8 (84-198)||(7986897-7987011)
chr8 (84-204)||(36582620-36582740)
chr8 (83-200)||(31006353-31006470)
chr8 (84-191)||(7968163-7968270)
chr8 (74-204)||(11481729-11481860)
chr8 (79-199)||(6870294-6870414)
chr8 (23-76)||(28211747-28211800)
[»] scaffold0057 (1 HSPs)
scaffold0057 (82-204)||(66858-66980)
[»] scaffold0155 (1 HSPs)
scaffold0155 (82-198)||(6640-6756)


Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 226 - 723
Target Start/End: Original strand, 5482041 - 5482538
Alignment:
Q  226 ctatgcttagtagatggaatctctacaagctccagcatctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttg 325  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5482041 ctatgcttagtagatggaatctctacaagctccagcaactagacctgtcatataattatctaacaggtgatacaactgaaacgattgaggccttgtcttg 5482140  T
Q  326 tggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgat 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5482141 tggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgttctttcttgat 5482240  T
Q  426 ctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaata 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||    
T  5482241 ctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccaacctctataggaaacttatcaaatctaaatcatctgagcttggagaata 5482340  T
Q  526 acaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatat 625  Q
    ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5482341 acatgatgactggtataattcctgaatgtatcagtcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatat 5482440  T
Q  626 tcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccacctttta 723  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  5482441 tcattttaataatctcacaaacctagtgagtttaactctgtcataaaaaaacaacacatttgcattgaaattgacaaatgactgggttccacctttta 5482538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 42622539 - 42622357
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgg 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||    
T  42622539 ataggaagttaaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggataccattaaatccgcatccgtattcattaattaacgg 42622440  T
Q  122 gtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||    
T  42622439 gtagttaaaatatccatttattttatccgtggatatccattaaggtatccgttccgtgtccgtgacggattttatccgcggat 42622357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 225 - 763
Target Start/End: Original strand, 5490097 - 5490635
Alignment:
Q  225 tctatgcttagtagatggaatctctacaagctccagcatctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtctt 324  Q
    ||||||||| | |||||||| |||| |||||| ||   |||| || |||| ||||||| ||| |  | |||||  |||||||||||||||||  ||||||    
T  5490097 tctatgcttggaagatggaagctctgcaagcttcaatttctatacttgtcgtataattctcttattgctgatatgactgaaatgattgaggcaatgtctt 5490196  T
Q  325 gtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttga 424  Q
    || | |||||||| ||||||  |||| ||||  ||   |||||||||  |||||| |||||  ||  |||||| || ||||| | |||| |   ||||||    
T  5490197 gtagcaaccaaagtctgaagagtttagatttaagtcaaaatcaactatttgggaatttgcccaatagtttaggtcagtttaaaaatttgtttagtcttga 5490296  T
Q  425 tctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaat 524  Q
    ||| ||||| |||||    ||  ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| | |||| ||||||||| ||        
T  5490297 tctatcaaaaaactcatggaacacacactcaggtgtctcaggtcctataccagcatctataggaaacttatcaaatttgaattctctgagcttggaaggc 5490396  T
Q  525 aacaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaata 624  Q
    |||| | ||| ||| | |||||||||| ||||  ||||||| ||  |||||| || ||||||  ||||||| ||||||||||| ||||||||||||||||    
T  5490397 aacatgttgaatgggacaattcctgaaagtatcggtcaactaacagatttgttttctctaaacttacttgacaattattgggaaggtataatgacaaata 5490496  T
Q  625 ttcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaa 724  Q
    |||||||| |||||||| ||||||||   |||||| || ||||||||||||| || ||| ||||||||||| |||||||||||||||||||| |||||||    
T  5490497 ttcattttcataatctctcaaacctacgtagtttatctgtgtcatctaaaaagaatacacttgctttgaaagtgacaaatgactgggttccagcttttaa 5490596  T
Q  725 gtatttgagttatgtcgaaatacatgattgtcaagttgg 763  Q
    | |||||  |||||||||||| | ||||||| |||||||    
T  5490597 gaatttgtcttatgtcgaaattcgtgattgtaaagttgg 5490635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 263 - 763
Target Start/End: Original strand, 5495920 - 5496420
Alignment:
Q  263 tctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagt 362  Q
    ||||||||| |||| ||||| | | || ||||||| | |||| |  ||||||||| |||||||| | ||||||||  ||| ||| ||  ||||| ||  |    
T  5495920 tctagacctatcatctaattttattactggtgatatagctgataccattgaggccatgtcttgtagcaaccaaagtttgatgttgttggatttgagttat 5496019  T
Q  363 aatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgatctttcaaacaactctgtcaattcacactcaggtatct 462  Q
    || ||||||||||||||||||||||||||||||||| | |||| || | || |    |||||  | ||||  ||| | || ||||||||||||||| |||    
T  5496020 aaccaactaactgggaaattgcctcattctttagggaagtttaccaatctgtttaggcttgacatatcaagaaacacagtaaattcacactcaggtgtct 5496119  T
Q  463 caggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtca 562  Q
    ||||||  |||||| | ||||||||||||||||||||||||  || |||   ||| ||    |||| ||||| ||| | |||||||||| ||||  ||||    
T  5496120 caggtccaataccaacatctataggaaacttatcaaatctacgttctctttacttggaaggcaacatgatgaatggaacaattcctgaaagtattggtca 5496219  T
Q  563 acttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaact 662  Q
    ||| ||||| |||| ||  ||| | |||||||||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |||||  ||    
T  5496220 actaaccaaattgttttccctacacctacttgagaatgattggaaaggtataatgacaaatattcattttcataatcttacaaacctagtcagtttctct 5496319  T
Q  663 atgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaagttg 762  Q
     ||||||||||||| | |||| ||||||||||| |||||||| |||||||||||||||||||| |||||   ||||| ||||| | |||||||||| |||    
T  5496320 gtgtcatctaaaaagagcacacttgctttgaaagtgacaaataactgggttccaccttttaaggatttgcaatatgttgaaattcgtgattgtcaaattg 5496419  T
Q  763 g 763  Q
    |    
T  5496420 g 5496420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 482 - 767
Target Start/End: Original strand, 5485384 - 5485669
Alignment:
Q  482 tataggaaacttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattat 581  Q
    |||||||||||||||||||||| ||| ||||| ||| ||    |||| ||||| ||| |||||||||||| ||||  ||||||| ||||||||| ||| |    
T  5485384 tataggaaacttatcaaatctatattctctgaacttggaaggcaacatgatgaatgggataattcctgaaagtattggtcaactaaccaatttgaattct 5485483  T
Q  582 ctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataaca 681  Q
    ||||| |||||||| ||||||||||| |||| ||||||||||| |||||| |||||||||||||||||| | |||||| |||| |||||||||   |||     
T  5485484 ctaaacctacttgacaattattgggaaggtacaatgacaaatactcatttcaataatctcacaaacctaattagtttatctatttcatctaaactaaact 5485583  T
Q  682 catttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaagttggccca 767  Q
    |||||||||||||| |||||||||| |||||||||||||||||| |||||  | |||| || || | || ||||||||||||||||    
T  5485584 catttgctttgaaagtgacaaatgattgggttccaccttttaagaatttgtttcatgttgatattcgtggttgtcaagttggccca 5485669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 273 - 776
Target Start/End: Original strand, 5500962 - 5501462
Alignment:
Q  273 tcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaa 372  Q
    |||| |||||||||||| ||||||| ||| ||||||||||||||| |||||||  | |||| |||  ||  ||| ||  ||||| ||   ||||||||||    
T  5500962 tcatctaattatctaactggtgatataacagaaatgattgaggccatgtcttgcagcaacctaagtttggggttgttggatttgagtcaaaatcaactaa 5501061  T
Q  373 ctgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgatctttcaaacaactctgtcaattcacactcaggtatctcaggtcatat 472  Q
     |||||||||||| | |||||| |||   |||||||   || |   | |||| || ||||  |||||  | || || ||||||||||||||||||| |||    
T  5501062 gtgggaaattgccccgttctttggggatgtttaacaaactgtttagtgttgacctgtcaagaaactcaatgaactcgcactcaggtatctcaggtcctat 5501161  T
Q  473 accagcctctataggaaacttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtcaacttaccaat 572  Q
    |||||| |||||||||||||||||||| |||  |   |||| ||| ||    |||| ||||| ||| | |||||| ||| ||||  ||||||| ||||||    
T  5501162 accagcatctataggaaacttatcaaaactaggtgccctgaacttggaaggcaacatgatgaatgggacaattccagaaagtattggtcaactaaccaat 5501261  T
Q  573 ttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaactatgtcatcta 672  Q
    ||||||| |||| | |||||||  ||||||||||| ||||||||||||||||||||||| |||   |||||||| ||||| ||||| ||| |||||||||    
T  5501262 ttgtattctctacacctacttggtaattattgggaaggtataatgacaaatattcatttcaat---ctcacaaagctagtcagtttcactgtgtcatcta 5501358  T
Q  673 aaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaagttggcccagcatt 772  Q
    ||||||||| | || |||||||| |||||||||| |||||||| ||||||||||||||||||  | ||||||| ||   |||| | ||||||||||||||    
T  5501359 aaaataacaaactttctttgaaagtgacaaatgattgggttcccccttttaagtatttgagtcgtatcgaaattcacagttgtaatgttggcccagcatt 5501458  T
Q  773 tcct 776  Q
    ||||    
T  5501459 tcct 5501462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 262 - 782
Target Start/End: Original strand, 5467377 - 5467897
Alignment:
Q  262 atctagacctgtcatataattatctaacaggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtag 361  Q
    |||||||||| |||| |||| |||||||   ||||| |||| || | || ||||||||||||||| | |||||||||||| || || || |||||  |      
T  5467377 atctagacctatcatctaatgatctaaccattgatataactcaagtaatggaggccttgtcttgtagcaaccaaagcctggaggttctagatttgaatta 5467476  T
Q  362 taatcaactaactgggaaattgcctcattctttagggcaatttaacagtttgctctttcttgatctttcaaacaac-tctgtcaattcacactcaggtat 460  Q
    |||||||||||||||||||||||||||||| |||||  || |||  |||||||     |||||  ||   |||||| ||| | |  ||||||  ||||||    
T  5467477 taatcaactaactgggaaattgcctcattcattaggaaaacttactagtttgcgtcagcttgacattagtaacaacctct-tgacctcacacataggtat 5467575  T
Q  461 ctcaggtcatataccagcctctataggaaacttatcaaatctaaattatctgagcttagagaat-aacaggatgactggtataattcctgaatgtataag 559  Q
    ||| |||| ||||||||| ||||||||||| |||||||||||| | | | ||   || |||||  |||| ||||| ||| | |||||||||| | ||  |    
T  5467576 ctcgggtcctataccagcatctataggaaatttatcaaatctagaatttttgtattt-gagaaacaacatgatgaatgggacaattcctgaaagcattgg 5467674  T
Q  560 tcaacttaccaatttgtattatctaaaactacttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagttta 659  Q
    | |||| ||||||||||||| |||| | |||||||||||| ||||||| ||||  |||||||||||||||||  | ||||||||||||||| | ||||||    
T  5467675 taaactaaccaatttgtattttctagacctacttgagaatcattgggaaggtactatgacaaatattcatttccacaatctcacaaacctactcagttta 5467774  T
Q  660 actatgtcatctaaaaataacacatttgctttgaaattgacaaatgactgggttccaccttttaagtatttgagttatgtcgaaatacatgattgtcaag 759  Q
     || ||||||||||| | ||| |||||||||||||| |||||||||||||||||||| ||||||||  ||||    |||| |||||   | |||||||||    
T  5467775 tctgtgtcatctaaacaaaactcatttgctttgaaagtgacaaatgactgggttccaacttttaagggtttgtaccatgttgaaatttgtaattgtcaag 5467874  T
Q  760 ttggcccagcatttcctcactgg 782  Q
    ||||||||||||||||| |||||    
T  5467875 ttggcccagcatttcctaactgg 5467897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 5110528 - 5110650
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| |||||    
T  5110528 ggataccattaaatccgcattcgtatccattaattagcgggtagttaaaaaattcatttattttatccatggatatccattaaggtatccgctctgtgtc 5110627  T
Q  182 cgtggcggattttatccacggat 204  Q
    |||||| |||||||||| |||||    
T  5110628 cgtggcagattttatccgcggat 5110650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 5704917 - 5705039
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||  |||||| |||||||||||||| |||||| |    
T  5704917 ggataccattaaatccacatccgtatccattaattagcggatagttaaaaaatccatttattttatccacggatatacattaaggtatccgttccgtgcc 5705016  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||||||||||||||||| |||||    
T  5705017 cgtggcggattttatccgcggat 5705039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 5938998 - 5939119
Alignment:
Q  83 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 182  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||||| |||||| |||||    
T  5938998 gataccattaaatccgcatttgtatccattaattagcgggtagttaaaaaatccatttattatatccatgaatatccattaaggtattcgctccatgtcc 5939097  T
Q  183 gtggcggattttatccacggat 204  Q
    ||| ||||||||||| ||||||    
T  5939098 gtgacggattttatctacggat 5939119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 291 - 730
Target Start/End: Original strand, 5477041 - 5477477
Alignment:
Q  291 ggtgatacaactgaaatgattgaggccttgtcttgtggaaaccaaagcctgaagtttttaaatttgggtagtaatcaactaactgggaaattgcctcatt 390  Q
    ||||||| ||| ||| |||| ||||| ||||||||| | |||||||||||  |||||||| ||||  |   |||||||||||||||||||||||||||||    
T  5477041 ggtgatataaccgaactgatagaggcattgtcttgtagcaaccaaagcctagagtttttagatttaaggtttaatcaactaactgggaaattgcctcatt 5477140  T
Q  391 ctttagggcaatttaacagtttgctctttcttgatctttcaaacaactctgtcaattcacactcaggtatctcaggtcatataccagcctctataggaaa 490  Q
    | |||||| ||||||  |||||| | | ||||||| | ||||  ||| | || || |||||| |    |||||||||| ||||||| | |||||||||||    
T  5477141 cattagggaaatttactagtttgttttatcttgatttgtcaacaaacccggtgaactcacacac---gatctcaggtcctataccaacatctataggaaa 5477237  T
Q  491 cttatcaaatctaaattatctgagcttagagaataacaggatgactggtataattcctgaatgtataagtcaacttaccaatttgtattatctaaaacta 590  Q
    ||||||||||||   ||||||||   | || || |||| | ||| ||| | |||||| ||| | ||  || |||| ||||||||| ||| |||| | |||    
T  5477238 cttatcaaatcttgtttatctgaatgtggacaacaacaagttgaatgggaaaattccggaaagcattggtaaactaaccaatttgcattctctacaccta 5477337  T
Q  591 cttgagaattattgggagggtataatgacaaatattcattttaataatctcacaaacctagtgagtttaactatgtcatctaaaaataacacatttgctt 690  Q
    |  |||||||||||||| |||| | | |||||  | |||||  |||||||||||||||| ||   |||| || ||||||||||||| ||  || || |||    
T  5477338 cgcgagaattattgggaaggtacacttacaaacttacatttccataatctcacaaacctggtatatttatctgtgtcatctaaaaaaaattcactttctt 5477437  T
Q  691 tgaaattgacaaatgactgggttccaccttttaagtattt 730  Q
    | ||| |||| ||||| |||||||||||||||||| ||||    
T  5477438 tcaaagtgacgaatgattgggttccaccttttaagaattt 5477477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 13626122 - 13626007
Alignment:
Q  83 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||| | |||||||||||||||||||||| || | ||    
T  13626122 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctgtttattttatccatagatatccattaaggtatccgcttcgcgccc 13626023  T
Q  183 gtggcggattttatcc 198  Q
    |||| | |||||||||    
T  13626022 gtggtgaattttatcc 13626007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 31575751 - 31575637
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| || || | |||||||||||| || |||||||||||| ||||| ||| |||||    
T  31575751 ggatacaattaaatccgcatccgtatccattaattagcgggtagttacaaaattcgtttattttatccatgcatatccattaagatatccactctgtgtc 31575652  T
Q  182 cgtggcggattttat 196  Q
     ||||||||||||||    
T  31575651 agtggcggattttat 31575637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 45151049 - 45150940
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||| |||||||||||| |||||||| ||||||||||||| ||  || |    
T  45151049 ggataccattaaatccgcatctgtatccattaattagcggatagttaaaaaatccgtttattttatccatggatatctattaaggtatccgttctatgcc 45150950  T
Q  182 cgtggcggat 191  Q
    ||||||||||    
T  45150949 cgtggcggat 45150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 13807865 - 13807920
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatcca 137  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  13807865 ggataccattaaatccacatccgtatccattaataagcgggtagttaaaaaatcca 13807920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 14701489 - 14701577
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc 170  Q
    ||||||||| |||||||||||||||||||| || |  ||| ||||| |||| ||| |||||||||||| || ||||| |||||| ||||    
T  14701489 ggataccatcaaatccgcatccgtatccatcaaatcacggatagttgaaatgtccgtttattttatccatgaatatctattaagatatc 14701577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 5e-89; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 40568807 - 40568625
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  40568807 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcgaataccattaaatccgcatccgtatccattaattagcgg 40568708  T
Q  122 gtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  40568707 gtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcgaattttatccgcggat 40568625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 74 - 209
Target Start/End: Complemental strand, 36464619 - 36464484
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||| |||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  36464619 gcgggtgcggatatcattaaatccgcatccgtatctattaattagcggatagttaaaatatccgtttattttatccatggatatccgttaaggtatccgc 36464520  T
Q  174 tccgtgtccgtggcggattttatccacggatgcgga 209  Q
    ||||||||||||||||||||||||| ||| ||||||    
T  36464519 tccgtgtccgtggcggattttatccgcgggtgcgga 36464484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 8819109 - 8818979
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||| |||||||||||| || |||||| |||||||||||||    
T  8819109 gcgggtgcggataccattaaatccgcatccatatccattaattaacagatagttaaaatatccgtttattttatccatgaatatccgttaaggtatccgc 8819010  T
Q  174 tccgtgtccgtggcggattttatccacggat 204  Q
    | |||||||||| |||||||||||| |||||    
T  8819009 ttcgtgtccgtgacggattttatccgcggat 8818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 19842054 - 19842166
Alignment:
Q  86 accattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtg 185  Q
    |||||||||||||||||  ||||||||||||||||  ||||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  19842054 accattaaatccgcatctttatccattaattagcgattagttaaaaaatccgtttattttatccatggatatccattaaggtatccactccgtgtccgtg 19842153  T
Q  186 gcggattttatcc 198  Q
    |||||||||||||    
T  19842154 gcggattttatcc 19842166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 38951944 - 38952064
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||| ||||||||||| |||||||||||||  | |    
T  38951944 ataccattaaatccgcatctgtatccattaattagcgggtagttaaaaaatctgtttattttatccgtgaatatccattaatgtatccgctccgtacctg 38952043  T
Q  184 tggcggattttatccacggat 204  Q
    ||||||||||||||| |||||    
T  38952044 tggcggattttatccgcggat 38952064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 41041758 - 41041880
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||| |||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |  |||||||||||||||||||||||||| |    
T  41041758 ggatatcattaaattcgcatctgtatctattaattagcgggtagttaaaaaatccatttattttatccataaatatccattaaggtatccgctccgtgcc 41041857  T
Q  182 cgtggcggattttatccacggat 204  Q
    |||   ||||||||||| |||||    
T  41041858 cgtaatggattttatccgcggat 41041880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 22279323 - 22279443
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||| |||||||| ||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||| ||||| | ||||||    
T  22279323 ggatactattaaatctgcatctgtatccattaattaacgggtagttaaaa-atccatttattttatccatggatatcctttaagggatccgtttcgtgtc 22279421  T
Q  182 cgtggcggattttatccacgga 203  Q
    | ||||||||||||||| ||||    
T  22279422 catggcggattttatccgcgga 22279443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 29117318 - 29117393
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatcc 149  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29117318 gcggatgcggataccgttaaatccgcatccgtatccattaattagcgggtagttaaaatatccgtttattttatcc 29117393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 17120096 - 17119979
Alignment:
Q  79 tgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 178  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||| |||||||||||| | ||||||| ||||  | ||||| ||||||| |||||||| ||    
T  17120096 tgcggatgccattaagtccgcattcgtatccattaattagcggatagttaaaatattcgtttatttcatccacgaatatctattaaggcatccgctctgt 17119997  T
Q  179 gtccgtggcggattttat 196  Q
    | |||||| |||||||||    
T  17119996 gcccgtggtggattttat 17119979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 33340921 - 33341041
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||| | ||| || |||||||||||   | |||||||     
T  33340921 ataccattaaatctgcatccgtatccattaattagtaggtagttaaaatatccgtttattttatccatagatgtctattaaggtatctatttcgtgtcca 33341020  T
Q  184 tggcggattttatccacggat 204  Q
    |  |||||||||||| |||||    
T  33341021 taacggattttatccgcggat 33341041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 40714639 - 40714518
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||| ||||||| |||||||||| ||||| ||||||| ||||||| || ||||||||||||||||||||||||||  |  ||||||||||| ||||||||    
T  40714639 gcgggtgcggatgccattaaatctgcatctgtatccactaattagtgg-tagttaaaatatccatttattttatcgataaatatccattaatgtatccgc 40714541  T
Q  174 tccgtgtccgtggcggattttat 196  Q
    | |||| | ||| ||||||||||    
T  40714540 ttcgtgcctgtgacggattttat 40714518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 23627178 - 23627282
Alignment:
Q  76 ggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc 175  Q
    |||||| |||||||||| ||  ||||  |||||||||||||||| |||||||||||||| | |||||||||||| || || ||||||||||||||| |||    
T  23627178 ggatgcagataccattatatatgcatatgtatccattaattagcaggtagttaaaatattcgtttattttatccatgtatttccattaaggtatccactc 23627277  T
Q  176 cgtgt 180  Q
    |||||    
T  23627278 cgtgt 23627282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 42555654 - 42555762
Alignment:
Q  79 tgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 178  Q
    |||||||| |||||||||| ||| | ||| ||||||||||  |||||||||||||||  |||||||||| | | ||||||||||||||||||||||| ||    
T  42555654 tgcggatatcattaaatccacattcatattcattaattagttggtagttaaaatatctgtttattttattcattgatatccattaaggtatccgctctgt 42555753  T
Q  179 gtccgtggc 187  Q
    ||| |||||    
T  42555754 gtctgtggc 42555762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 94 - 197
Target Start/End: Original strand, 43624675 - 43624768
Alignment:
Q  94 atccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattt 193  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||| |||          |||||||||||||| ||||||||||||||||||||||||    
T  43624675 atccgcatccgtatccattaattagcgggtagttaaaaaatccgtttgttt----------tatccattaaggtacccgctccgtgtccgtggcggattt 43624764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 100 - 199
Target Start/End: Original strand, 51357530 - 51357629
Alignment:
Q  100 atccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcca 199  Q
    ||||| ||| |||||||||| | || ||||||||||| |||||||||||| |  ||||||||||||||||| ||| | |||| |||||||||||||||||    
T  51357530 atccgcatcaattaattagcagataattaaaatatccgtttattttatccataaatatccattaaggtatctgcttcatgtcagtggcggattttatcca 51357629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 47224121 - 47224232
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    ||||||| ||||| ||||| | ||||||||| ||| || || || ||||||||| ||||||||||  ||||||| |||||||||||  ||| |||||  |    
T  47224121 ataccatcaaatctgcatctgcatccattaaatagtggataattgaaatatccacttattttatctttggatattcattaaggtatttgcttcgtgtttg 47224220  T
Q  184 tggcggatttta 195  Q
    | ||||||||||    
T  47224221 ttgcggatttta 47224232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 42555582 - 42555635
Alignment:
Q  23 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcg 76  Q
    ||||||||||||||| |||||||||||||| |||||| |||  |||||||||||    
T  42555582 taggaagttgaaaggtattaaggatatttatgtaatttacttggtttaatagcg 42555635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 48747921 - 48747966
Alignment:
Q  129 aaatatccatttattttatccgtggatatccattaaggtatccgct 174  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  48747921 aaatatccgtttattttatccttggatatccattaaggtattcgct 48747966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 50667912 - 50667871
Alignment:
Q  107 tccattaattagcgggtagttaaaatatccatttattttatc 148  Q
    |||||||| ||||  |||||||||||||||||||||||||||    
T  50667912 tccattaactagcaagtagttaaaatatccatttattttatc 50667871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 5e-86; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 27337257 - 27337441
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  27337257 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggataccattaaatccgcatccgtatctattaattagcgg 27337356  T
Q  122 gtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggatgcgga 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  27337357 gtagttaaaatatccatttattttattcgtggatatccattaaggtatccgctccgtgtccgtggcgga---tatccacggatgcgga 27337441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 1052873 - 1052754
Alignment:
Q  79 tgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 178  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  1052873 tgcggataccattaaatccacatccttatccattaattagcgggtagttaaaatatccgtttattttatccatggatatccattaaggtatccgctccgt 1052774  T
Q  179 gtccgtggcggattttatcc 198  Q
    |||||||||| |||||||||    
T  1052773 gtccgtggcgaattttatcc 1052754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 33189638 - 33189760
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||||||| ||| |||||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  33189638 ggataccattgaattcgcatctgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatatccattaaggtatccgctccgtgtc 33189737  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||||||||||||||||| |||||    
T  33189738 cgtggcggattttatccgcggat 33189760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 36299119 - 36299238
Alignment:
Q  79 tgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 178  Q
    ||||||||||||||||||  |||  ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||    
T  36299119 tgcggataccattaaatcaacatttgtatccattaattagcgggtagttaaaatattcatttattttatccatggatatccattaagatatccgctccgt 36299218  T
Q  179 gtccgtggcggattttatcc 198  Q
    ||||||||| ||||||||||    
T  36299219 gtccgtggcagattttatcc 36299238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 79 - 204
Target Start/End: Original strand, 47925151 - 47925276
Alignment:
Q  79 tgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 178  Q
    ||||||||||||||||||| | | |||||||||||||||  |||||||||||||||| ||||||||||||   ||||||||||||||||||||| |||||    
T  47925151 tgcggataccattaaatccactttcgtatccattaattaatgggtagttaaaatatctatttattttatctaaggatatccattaaggtatccgttccgt 47925250  T
Q  179 gtccgtggcggattttatccacggat 204  Q
    |||||||||||||||||||| |||||    
T  47925251 gtccgtggcggattttatccgcggat 47925276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 11038996 - 11038881
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||||||||| |||| |||||||||||| || ||||||||||||||||| ||||| ||||    
T  11038996 ggataccattaaatccgtatccatattcattaattagcgggtagttaaaaaatccgtttattttatccatgaatatccattaaggtatctgctccatgtc 11038897  T
Q  182 cgtggcggattttatc 197  Q
    ||||||||||||||||    
T  11038896 cgtggcggattttatc 11038881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 7767314 - 7767429
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||| | |||||| |||||||||||| |||||||||||| |||| |||||||||| | |||||||||||||| ||||||||||| ||||    
T  7767314 ggataccattaaatctgaatccgtgtccattaattagggggtagttaaaaaatccgtttattttattcatggatatccattaaagtatccgctccatgtc 7767413  T
Q  182 cgtggcggattttatc 197  Q
    ||||||||||||||||    
T  7767414 cgtggcggattttatc 7767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 30541295 - 30541196
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| ||||||    
T  30541295 ataccattaaatcggcatccatatccattaattagcgggtagttaaaatattcgtttattttatccatggatatccattaaggtatccgctccatgtccg 30541196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 2943869 - 2943746
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    ||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||||||||| || |  |||||||||||||||| |||    
T  2943869 gcggatgtggataccattaaatctgcattcgtatc-attaattagcgggtagttaaaatatccgtttattttacccataaatatccattaaggtattcgc 2943771  T
Q  174 tccgtgtccgtggcggattttatcc 198  Q
    ||||| |||||  ||||||||||||    
T  2943770 tccgtatccgtaacggattttatcc 2943746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 38440221 - 38440133
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc 170  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||||||||||  ||||||||||||||||||||    
T  38440221 ggataccatcaaatccgcatccgtatccattaattagcgggtagttaaaaaattcgtttattttatctatggatatccattaaggtatc 38440133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 5973310 - 5973417
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||| || | |||||||||||  ||||| |||||||||||||||| |||||| ||     
T  5973310 ataccattaaatccgcatctgtatccattaattagtggatagttaaaaaattcgtttattttatcaatggatttccattaaggtatccgttccgtgccca 5973409  T
Q  184 tggcggat 191  Q
    ||||||||    
T  5973410 tggcggat 5973417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 23809485 - 23809405
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccatt 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||||||| || |||||||||    
T  23809485 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaacctgtttattttatccatgaatatccatt 23809405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 22518991 - 22518891
Alignment:
Q  77 gatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctcc 176  Q
    |||||||||||||||||| || ||||||||||||||| || || ||||||||||||||   |||||||||||  |||||||||||||||||||  |||||    
T  22518991 gatgcggataccattaaacccacatccgtatccattattt-gcaggtagttaaaatatttgtttattttatctatggatatccattaaggtatttgctcc 22518893  T
Q  177 gt 178  Q
    ||    
T  22518892 gt 22518891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 43427129 - 43427061
Alignment:
Q  126 ttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggatttt 194  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||||||| || | || |||||||||    
T  43427129 ttaaaatatccatttattttattcatggatgtccattaaggtatccgctccatgcctgttgcggatttt 43427061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 1e-77; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 40057130 - 40057293
Alignment:
Q  41 taaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccattt 140  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40057130 taaggatatttacgtaattcactcagtttaatagcgggtgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatctattt 40057229  T
Q  141 attttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40057230 attttatccgtagatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 40057293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 39800331 - 39800133
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggata----------------ccattaaatccgcatccgt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                |||||||||||||||||||    
T  39800331 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgggtgcggatatccgcgggtgcagataccattaaatccgcatccgt 39800232  T
Q  106 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39800231 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 39800133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 35188469 - 35188312
Alignment:
Q  47 tatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttatttta 146  Q
    |||||| |||||| |||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  35188469 tatttatgtaatttactcggtttaatagcgggtgtggataccactaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttatttta 35188370  T
Q  147 tccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35188369 tccatggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 35188312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 39206978 - 39206821
Alignment:
Q  47 tatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttatttta 146  Q
    |||||| |||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  39206978 tatttatgtaatttactcggtttaatagcgggtgtggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttatttta 39206879  T
Q  147 tccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||| | ||||||||||||||||||||||| ||| |||||||||||||||||| |||||    
T  39206878 tccatcgatatccattaaggtatccgctctgtgcccgtggcggattttatccgcggat 39206821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 33742584 - 33742404
Alignment:
Q  23 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcggg 122  Q
    |||||||||||| |  ||||||| |||||| |||||| |||| |||||||||||| || |||||| |||| ||||||||| |||||||||||||| ||      
T  33742584 taggaagttgaatgatattaaggttatttatgtaatttactctgtttaatagcgggtgtggatacaattacatccgcatctgtatccattaattaacga- 33742486  T
Q  123 tagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||| ||||||||||||||||| |||||||| |||||||||||| |||| ||||||||| |||||||||||||||||    
T  33742485 tagttaaaaaatccatttattttatccatggatatcaattaaggtatccactccatgtccgtggaggattttatccacggat 33742404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 23429557 - 23429677
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||| |||| | ||||||||||||||| |||||| ||||||||||    
T  23429557 ataccattaaatccgcatctgtatccattaattagcgagtagttaaaaaatccgtttatgttattcatggatatccattaagatatccgttccgtgtccg 23429656  T
Q  184 tggcggattttatccacggat 204  Q
    | |||||||||||| ||||||    
T  23429657 tagcggattttatctacggat 23429677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 197
Target Start/End: Original strand, 3926514 - 3926629
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||||||||  |||||||||| |||  |||||||||| |||| |||||||||||| | ||||||||||||| ||||||||||||| |    
T  3926514 ggataccattaaatccgcatccacatccattaataagcatgtagttaaaaaatccgtttattttatccatagatatccattaagatatccgctccgtgcc 3926613  T
Q  182 cgtggcggattttatc 197  Q
     |||||||||||||||    
T  3926614 tgtggcggattttatc 3926629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 39886987 - 39887104
Alignment:
Q  83 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 182  Q
    |||||||| ||||| ||||| |||||||||||||||| ||||||| |||||| | |||||||||||| || |||||||||||| |||||  || |||| |    
T  39886987 gataccatgaaatctgcatctgtatccattaattagcaggtagttgaaatattcgtttattttatccatgtatatccattaagatatccattctgtgttc 39887086  T
Q  183 gtggcggattttatccac 200  Q
    ||||||||||||||||||    
T  39887087 gtggcggattttatccac 39887104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 42878761 - 42878646
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||||||||||||||||| | |||||||||||||  ||||| |||||| |||| |||||||||||  ||||||| |||||| ||||| |||| |||||    
T  42878761 ggataccattaaatccgcattcatatccattaattaatgggtatttaaaaaatccgtttattttatctatggatattcattaaagtatctgctctgtgtc 42878662  T
Q  182 cgtggcggattttatc 197  Q
     ||| |||| ||||||    
T  42878661 tgtgacggagtttatc 42878646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 42837829 - 42837950
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||| |||||||| ||||  || ||||||| ||| ||| ||||||||| |||| |||||||||||| | ||||||||||||| ||||||||| |||||    
T  42837829 ggatactattaaatctgcata-gtgtccattatttaacggatagttaaaaaatccgtttattttatccatagatatccattaagatatccgctctgtgtc 42837927  T
Q  182 cgtggcggattttatccacggat 204  Q
     ||||||| |||||||| |||||    
T  42837928 tgtggcgggttttatccgcggat 42837950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 26621676 - 26621800
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||||||  |||||||||||||  ||||| || ||  |||||||| |||||||||||||||   |||||||||||| | || |||||||||||||| |||    
T  26621676 gcggatggagataccattaaatatgcatctgtgtctgttaattagtgggtagttaaaatatttgtttattttatccatagacatccattaaggtatgcgc 26621775  T
Q  174 tccgtgtccgtggcggattttatcc 198  Q
    || || ||| |||| ||||||||||    
T  26621776 tctgtatccttggcagattttatcc 26621800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 2209865 - 2209917
Alignment:
Q  75 cggatgcggataccattaaatccgcatccgtatccattaattagcgggtagtt 127  Q
    ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  2209865 cggatgcgggtaccattaaatctgcatccgtatccattaattagtgggtagtt 2209917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 138; Significance: 1e-71; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 22218 - 22416
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagc----------------ggatgcggataccattaaatccgcatccgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                || |||||||||||||||||||||||||||    
T  22218 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcaggtgcggatatccgcgggtgcggataccattaaatccgcatccgt 22317  T
Q  106 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  22318 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 22416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 25293936 - 25293738
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagc----------------ggatgcggataccattaaatccgcatccgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                || |||||||||||||||||||||||||||    
T  25293936 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcaggtgcggatatccgcgggtgcggataccattaaatccgcatccgt 25293837  T
Q  106 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25293836 atccattaattagcgggtagttaaaatatccatttattttatctgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 25293738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 29677420 - 29677298
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  29677420 ggataccattaaatccgcatccgtatccattaatttgcgggtagttaaaaaatccatttattttatccatggatatccattaaggtatcagctccgtgtc 29677321  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||| || |||||||||| |||||    
T  29677320 cgttgcagattttatccgcggat 29677298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 31585048 - 31584933
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||    
T  31585048 ggatatcattaaatccgcatccgtatccattaattagcgggtagttaaaaaacccatttattttatccatggatatccattaaggtatccgttccgtgtc 31584949  T
Q  182 cgtggcggattttatc 197  Q
    | ||||||||||||||    
T  31584948 catggcggattttatc 31584933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 25987628 - 25987783
Alignment:
Q  43 aggatatttacgtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttat 142  Q
    |||||||||| |||||| | || |||||||||||| || |||||||||||||||| |||  |||||||||||||||||||||||||||| || |||||||    
T  25987628 aggatatttatgtaatttaatcggtttaatagcgggtgtggataccattaaatccacatttgtatccattaattagcgggtagttaaaaaattcatttat 25987727  T
Q  143 tttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc 198  Q
    ||||||| | |||||||||||||||||| ||| |||| | ||| |||||| |||||    
T  25987728 tttatccatagatatccattaaggtatctgcttcgtgcctgtgacggattatatcc 25987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 11894579 - 11894701
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||| |||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||| | ||||||||||||||||||||||||||| |    
T  11894579 ggataccgttaaatccgcatccatatccattaattagcaggtagttaaaaaattcatttattttatccattgatatccattaaggtatccgctccgtgcc 11894678  T
Q  182 cgtggcggattttatccacggat 204  Q
    |||| |||||| ||||| |||||    
T  11894679 cgtgacggattatatccgcggat 11894701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 47141098 - 47141228
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||| ||| |||||||||||||  | || | ||||||||||||| |||||||| |||| ||||  ||||||||||| |||||||||||||||||||||||    
T  47141098 gcgggtgctgataccattaaatatgtattcctatccattaattaacgggtagtaaaaaaatccgcttattttatccatggatatccattaaggtatccgc 47141197  T
Q  174 tccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||||||||||||||||| |||||    
T  47141198 tccgtgtccgtggcggattttatccgcggat 47141228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 74 - 191
Target Start/End: Complemental strand, 2191608 - 2191491
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||| |||||||||||||||||| ||||| |||||||||||||| | ||||| |||||||||| |||||||||||| |||||||||||||| ||||||||    
T  2191608 gcgggtgcggataccattaaatctgcatctgtatccattaattaacaggtagataaaatatccgtttattttatccatggatatccattaaagtatccgc 2191509  T
Q  174 tccgtgtccgtggcggat 191  Q
    ||| | ||||||||||||    
T  2191508 tccatatccgtggcggat 2191491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 48378888 - 48378772
Alignment:
Q  88 cattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggc 187  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||| ||||||||||||| |||||      
T  48378888 cattaaatccgcatatgtatccattaattagcgggtagttaaaaaatccgtttattttatccatggatattcattaagctatccgctccgtgcccgtgat 48378789  T
Q  188 ggattttatccacggat 204  Q
    ||||||||||| |||||    
T  48378788 ggattttatccgcggat 48378772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 15379073 - 15379177
Alignment:
Q  94 atccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattt 193  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||  |||  |||| |||||| || |||||||    
T  15379073 atccgtatccgtatccattaattagcgggcagttaaaatatccgtttatttgatccatggatatccattaaaatatatgctcggtgtccatgacggattt 15379172  T
Q  194 tatcc 198  Q
    |||||    
T  15379173 tatcc 15379177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 38264145 - 38264075
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattt 144  Q
    |||| ||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  38264145 gcgggtgcggataccattaaattcacatccatatccattaattagcgggtagttaaaatatccatttattt 38264075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 121 - 204
Target Start/End: Complemental strand, 17562603 - 17562520
Alignment:
Q  121 ggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||||||| ||  ||||||||||||  |||||||||||||||||||||||||||||||| |||| |||||||||| |||||    
T  17562603 ggtagttaaaaaatttatttattttatctatggatatccattaaggtatccgctccgtgtccatggcagattttatccgcggat 17562520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 42507372 - 42507314
Alignment:
Q  138 tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttat 196  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  42507372 tttattttatccatggatatccattaaggtatccgctccgtgtcagtggcagattttat 42507314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 52252863 - 52253013
Alignment:
Q  54 gtaattcactcagtttaatagcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtgg 153  Q
    |||||| ||||||||||||| | |||| | ||||||| | ||| |||| |||||  ||||||||||   ||||| ||||||| ||||||||||||  ||     
T  52252863 gtaatttactcagtttaataacagatgtgaataccatgatatctgcattcgtatttattaattagcatatagttgaaatatctatttattttatctatga 52252962  T
Q  154 atatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    ||||  ||||||||||||| || ||||||||| | ||||||||||| ||||    
T  52252963 atatttattaaggtatccgttctgtgtccgtgacagattttatccatggat 52253013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 36728618 - 36728552
Alignment:
Q  138 tttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    |||||||||||| || || ||||| ||| ||||||||||||||| |||||||||||||||| |||||    
T  36728618 tttattttatccatgtatgtccatgaagatatccgctccgtgtctgtggcggattttatccgcggat 36728552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 15378980 - 15379034
Alignment:
Q  23 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcgg 77  Q
    ||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||||    
T  15378980 taggaagttgaaaggtattaaggttatttatgtaatttactcaatttaatagcgg 15379034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 9157 - 8959
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaata----------------gcggatgcggataccattaaatccgcatccgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| |||||||||||||||||| ||||||||    
T  9157 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaataacgggtgcggatatccgcgggtgcggataccattaaatcagcatccgt 9058  T
Q  106 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9057 atccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 8959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 6e-67; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 12149228 - 12149426
Alignment:
Q  22 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaata----------------gcggatgcggataccattaaatccgcatccgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||| |||||||||||||||||| ||||||||    
T  12149228 ataggaagttgaaaggcattaaggatatttacgtaattcactcagtttaataacgggtgcggatatccgcgggtgcggataccattaaatcagcatccgt 12149327  T
Q  106 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccacggat 204  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12149328 atccattaattaacgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatccgcggat 12149426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 27926444 - 27926322
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  27926444 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatctatttattttatccatggatatccattaaggtatccgctccgtgtc 27926345  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||||||||||||||||| |||||    
T  27926344 cgtggcggattttatccgcggat 27926322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 25874514 - 25874390
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattt--tatccgtggatatccattaaggtatccgctccgtg 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||  ||||| |||||||||||||||||||||||||||||    
T  25874514 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaaaatccgtttattttatatccatggatatccattaaggtatccgctccgtg 25874415  T
Q  180 tccgtggcggattttatccacggat 204  Q
      |||| |||||||||||| |||||    
T  25874414 ctcgtgacggattttatccgcggat 25874390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 3778788 - 3778666
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||  |||||||||| | ||||||||||||||||||||||||||||| |    
T  3778788 ggataccgttaaatccgcatctgtatccattaattagcggatagttaaaaaatctgtttattttattcatggatatccattaaggtatccgctccgtgcc 3778689  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||||||||||||||||| |||||    
T  3778688 cgtggcggattttatccgcggat 3778666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 21288410 - 21288527
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagtt-aaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgt 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||| | ||||||||||||| |||||||||||||     
T  21288410 ggataccattaaatccgcatccctatccattaattagcgggtagttaaaaaaatccgtttattttatccatagatatccattaagatatccgctccgtgc 21288509  T
Q  181 ccgtggcggattttatcc 198  Q
    ||||| || |||||||||    
T  21288510 ccgtgacgtattttatcc 21288527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 13826371 - 13826491
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||| | |||| |||||||||||||||| |||||||||| |||| |||||||||||| |||||||| ||||| ||||| |||||||| |    
T  13826371 ggataccattaaatctgtatccatatccattaattagcgagtagttaaaaaatccgtttattttatccatggatatctattaatgtatctgctccgtgcc 13826470  T
Q  182 cgtggcggattttatccacgg 202  Q
    |||||||||||||||| ||||    
T  13826471 cgtggcggattttatctacgg 13826491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 5295534 - 5295649
Alignment:
Q  83 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 182  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||||| || | |||||||||| | ||||||||||||||||||||||||||||| ||    
T  5295534 gataccattaaatctgcatctgtatccattaattagtgggtagttaaaaaatacgtttattttattcatggatatccattaaggtatccgctccgtgccc 5295633  T
Q  183 gtggcggattttatcc 198  Q
    ||||  ||||||||||    
T  5295634 gtggtagattttatcc 5295649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 48251298 - 48251176
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||| ||| | |||||||||||||| | || |||||||||||||||||||||||| | |||||||||||| ||||| ||||||| ||    
T  48251298 ggataccattaaatccgtatctgcatccattaattagcagttaattaaaatatccatttattttatccatagatatccattaaagtatctgctccgtatc 48251199  T
Q  182 cgtggcggattttatccacggat 204  Q
    |||| | |||||||||| |||||    
T  48251198 cgtgacagattttatccgcggat 48251176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 36585036 - 36585104
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttat 142  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| ||||||    
T  36585036 gcgggtgcggataccatttaatctgcatccgtatccattaattagcgggtagataaaatatctatttat 36585104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 53208798 - 53208902
Alignment:
Q  99 catccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc 198  Q
    |||| ||||||||||| ||  ||||||||  ||||||||||||||||| || ||||||||||||||||||| |||  ||||| |||  ||||||||||||    
T  53208798 catctgtatccattaagtaatgggtagttgtaatatccatttattttacccatggatatccattaaggtat-cgcctcgtgttcgtaccggattttatcc 53208896  T
Q  199 acggat 204  Q
    ||||||    
T  53208897 acggat 53208902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 26749152 - 26749244
Alignment:
Q  106 atccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccgtggcggattttatcc 198  Q
    ||||||||| ||||  |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||  | ||||||| | ||||||||||    
T  26749152 atccattaaatagcaagtagttgaaatatccatttattttatccattgatatccattaaggtatccactttgagtccgtgacagattttatcc 26749244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 27519955 - 27519860
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtat 169  Q
    |||||||||||| |||| |||||| ||||| ||||||| || || | | |||||||||||| | |||||||||||| ||||| |||||||| ||||    
T  27519955 gcggatgcggatcccatgaaatccacatccatatccataaaataacagctagttaaaatattcgtttattttatccatggatgtccattaaagtat 27519860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 25022477 - 25022411
Alignment:
Q  104 gtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatc 170  Q
    ||||||||||| || ||||||||||||||||| |||||| |||||| || ||||| |||||||||||    
T  25022477 gtatccattaaataacgggtagttaaaatatctatttatattatccatgaatatcaattaaggtatc 25022411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 36585102 - 36585147
Alignment:
Q  155 tatccattaaggtatccgctccgtgtccgtggcggattttatccac 200  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||    
T  36585102 tatccattaaagtatccgctccatgtccgtggcagattttatccac 36585147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 7622622 - 7622744
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||    
T  7622622 ggataccattaaatccgcatccgtatccattaattagcgggtaaataaaaaatccgtttattttatccatggatatccattaaggtatccgctccgcgtc 7622721  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||||||||||||||||| |||||    
T  7622722 cgtggcggattttatccgcggat 7622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 74 - 198
Target Start/End: Complemental strand, 641848 - 641724
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||||||||| ||||||||||||| |||  |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||  |||||||    
T  641848 gcggatgcggttaccattaaatcctcatatgtatccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaaaatatccgc 641749  T
Q  174 tccgtgtccgtggcggattttatcc 198  Q
    ||||||||||||| | |||||||||    
T  641748 tccgtgtccgtggtgaattttatcc 641724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 35167096 - 35166981
Alignment:
Q  83 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 182  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||  |||||     
T  35167096 gataccattaaatccacatccgtatcaattaattagcgggtagttaaaatatccgtttattttatccatggatatctattaaggtatccgctttgtgtct 35166997  T
Q  183 gtggcggattttatcc 198  Q
    |||| |||||||||||    
T  35166996 gtggtggattttatcc 35166981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 10408760 - 10408637
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgc 173  Q
    |||||||||||| ||| |||||| ||||| ||||| | || ||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||||    
T  10408760 gcggatgcggatgccaataaatctgcatctgtatctactatttagcgggtagttgaaatatccgtttattttatccatgaatatccattaaggtatccgc 10408661  T
Q  174 tccgtgtccgtggcggattttatc 197  Q
    ||||| ||||||||||||||||||    
T  10408660 tccgtttccgtggcggattttatc 10408637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 10788796 - 10788917
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||| ||||||||| |||  |||||||||||||||| ||||||||||| || | |||||||||||| ||||||||||||||||||||||||||||| |    
T  10788796 ggatactattaaatccacatttgtatccattaattagcaggtagttaaaa-attcgtttattttatccatggatatccattaaggtatccgctccgtgcc 10788894  T
Q  182 cgtggcggattttatccacggat 204  Q
    ||||||| ||||||||| |||||    
T  10788895 cgtggcgaattttatccgcggat 10788917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 28582484 - 28582587
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||| |||||||||| ||  ||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  28582484 ggatactattaaatccgtatttgtatccactaattaacgggtagttaaaatatccgtttattttatccatggatatccatcaaggtatccgctccgtgtc 28582583  T
Q  182 cgtg 185  Q
    ||||    
T  28582584 cgtg 28582587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 8577058 - 8577125
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatcc 149  Q
    ||||||||||||||| ||||| |||||||||||||| ||| | ||||||| | || ||||||||||||    
T  8577058 ggataccattaaatctgcatctgtatccattaattaacggttggttaaaaaaaccgtttattttatcc 8577125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 8227051 - 8226929
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| ||||||| |    
T  8227051 ggataccattaaatccgcatccgtatctattaattagcgggtagttaaaagatccgtttattttatccatgtatatccattaaggtatccactccgtgcc 8226952  T
Q  182 cgtggcggattttatccacggat 204  Q
    |||| |||||||||||| |||||    
T  8226951 cgtgacggattttatccgcggat 8226929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 9762743 - 9762621
Alignment:
Q  76 ggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctc 175  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||| |||  |||||||||||| |||||||||||||||||||||||||    
T  9762743 ggatgtggataccatcaaatccgcatccatatccattaattagcaggtagttaaaaaatctgtttattttatccatggatatccattaaggtatccgctc 9762644  T
Q  176 cgtgtccgtggcggattttatcc 198  Q
    |||| ||||||||||||||||||    
T  9762643 cgtgcccgtggcggattttatcc 9762621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 82 - 209
Target Start/End: Complemental strand, 28211725 - 28211598
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||| |||| |||||    
T  28211725 ggatactattaaatccgcattcgtatccattaattagtgggtagttaaaatatccgtttattttatccatagatatccattaaagtatctgctctgtgtc 28211626  T
Q  182 cgtggcggattttatccacggatgcgga 209  Q
    ||||||||||||||||| ||| ||||||    
T  28211625 cgtggcggattttatccgcgggtgcgga 28211598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 7987011 - 7986897
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  7987011 ataccattaaatccgcatccgtatccattaattagcaggtagttgacaaatccgtttattttatccatggatatccattaaggtatccgctccatgtccg 7986912  T
Q  184 tggcggattttatcc 198  Q
    | |||||||||||||    
T  7986911 tagcggattttatcc 7986897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 36582740 - 36582620
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    |||| |||||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| | ||||||||||||||| |||||||||||||| ||    
T  36582740 atactattaaatccgcatccgtatccattaattagtggatagttaaaaaatccgtttattttattcatggatatccattaagatatccgctccgtgttcg 36582641  T
Q  184 tggcggattttatccacggat 204  Q
    ||||||||||||||| |||||    
T  36582640 tggcggattttatccgcggat 36582620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 31006353 - 31006470
Alignment:
Q  83 gataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtcc 182  Q
    |||||| |||||||||  | ||| ||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||| |||||    
T  31006353 gataccgttaaatccgtgttcgtgtccattaattagcggatagttaaaatatccgtttattttatccatggatatccattaagatatccgctccatgtcc 31006452  T
Q  183 gtggcggattttatccac 200  Q
    ||||||||||||||||||    
T  31006453 gtggcggattttatccac 31006470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 7968270 - 7968163
Alignment:
Q  84 ataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtccg 183  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||| ||||    
T  7968270 ataccattaaatccgcatgcgtatccattaattagcgggtagttgaaaaatccgtttattttatccatggatatccattaaggtatccgctacgtatccg 7968171  T
Q  184 tggcggat 191  Q
    | ||||||    
T  7968170 tagcggat 7968163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 11481729 - 11481860
Alignment:
Q  74 gcggatgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaata-tccatttattttatccgtggatatccattaaggtatccg 172  Q
    ||||||| ||||||| |||||||| ||||| |||||||||||||||  |||||||||| | ||| |||||||||||  ||||||| ||| || |||||||    
T  11481729 gcggatgtggataccgttaaatccacatccatatccattaattagcaagtagttaaaaaaatccgtttattttatcgatggatattcatcaaagtatccg 11481828  T
Q  173 ctccgtgtccgtggcggattttatccacggat 204  Q
    ||||||  ||||||| ||||||||||||||||    
T  11481829 ctccgtacccgtggcagattttatccacggat 11481860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 6870414 - 6870294
Alignment:
Q  79 tgcggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgt 178  Q
    |||||||||||||||||| ||||  ||||| |||||||| |||||||||||| |||   |||||||||||| ||||||||||||||| |||||| || ||    
T  6870414 tgcggataccattaaatctgcatatgtatcaattaattaacgggtagttaaattatatgtttattttatccatggatatccattaagatatccgttctgt 6870315  T
Q  179 gtccgtggcggattttatcca 199  Q
     ||| ||  ||||||||||||    
T  6870314 atccttgaaggattttatcca 6870294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 28211800 - 28211747
Alignment:
Q  23 taggaagttgaaaggcattaaggatatttacgtaattcactcagtttaatagcg 76  Q
    ||||||||||||||| ||||||| |||||| |||||| |||  |||||||||||    
T  28211800 taggaagttgaaaggtattaaggttatttatgtaatttacttggtttaatagcg 28211747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 66858 - 66980
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||  | |||| ||| ||| |||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  66858 ggataccattaaatatgtatccatattcatcaattagagggtagataaaatatccgtttattttatccatggatatccattaaggtatccgctccgtgtc 66957  T
Q  182 cgtggcggattttatccacggat 204  Q
     ||| | ||||||||||||||||    
T  66958 tgtgacagattttatccacggat 66980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 6756 - 6640
Alignment:
Q  82 ggataccattaaatccgcatccgtatccattaattagcgggtagttaaaatatccatttattttatccgtggatatccattaaggtatccgctccgtgtc 181  Q
    ||||||||||||||||||||| ||||||||||||||  || |||||| || ||||||||||||||||| ||||||| ||||||| ||| || |||||| |    
T  6756 ggataccattaaatccgcatctgtatccattaattaatggttagttagaaaatccatttattttatccatggatattcattaagatattcgttccgtgcc 6657  T
Q  182 cgtggcggattttatcc 198  Q
    |||| ||||||||||||    
T  6656 cgtgacggattttatcc 6640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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