View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_low_7 (Length: 508)
Name: NF13279_low_7
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_low_7 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 40 - 489
Target Start/End: Original strand, 24493177 - 24493626
Alignment:
| Q |
40 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
139 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493177 |
tgttttccttggttattctacacaatatcactcttatatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
24493276 |
T |
|
| Q |
140 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccac |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24493277 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgctcacttcccaacatccgtggctcccactccctaatatcttttcccacccac |
24493376 |
T |
|
| Q |
240 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493377 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttc |
24493476 |
T |
|
| Q |
340 |
acccacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataac |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493477 |
acccacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataac |
24493576 |
T |
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| Q |
440 |
atacacaagccaaacaaaaagtatttgttggtcacaaaacatcctttacc |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493577 |
atacacaagccaaacaaaaagtatttgttggtcacaaaacatcctttacc |
24493626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 40 - 449
Target Start/End: Original strand, 92542 - 92951
Alignment:
| Q |
40 |
tgttttccttggttattctacacaatatcactcttacatttgtctagaccgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
139 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92542 |
tgttttacttggttattctacacaatatcactcttacatttgtctagatcgagccactcgaagagtgcatttatctcgtcatgttgtttttgttgaagac |
92641 |
T |
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| Q |
140 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccacttcccaacatccgtggctcccactccctaatatcttggcccacccac |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
92642 |
cagtttcctttctcccatcaaaacccccaaacctcacctccattactgcccactccccaacatccgtggctcccactccctaatatcttaacccacccac |
92741 |
T |
|
| Q |
240 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaacccaacccactccttcaaacacaaatagcattcaaccatcaccttc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
92742 |
atcagcctagaacctcagaaaccataatccataattcaaccacacctccatcaaccaaacccactccttcaaacacaaatagcattcaaccatcaccttc |
92841 |
T |
|
| Q |
340 |
acccacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataac |
439 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
92842 |
actcacgcttacatcctcatcacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataac |
92941 |
T |
|
| Q |
440 |
atacacaagc |
449 |
Q |
| |
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|||||||||| |
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| T |
92942 |
atacacaagc |
92951 |
T |
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