View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13279_low_8 (Length: 400)
Name: NF13279_low_8
Description: NF13279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13279_low_8 |
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| [»] scaffold1952 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 9239121 - 9238848
Alignment:
| Q |
10 |
aagaatatgcttaaactcaaaagaaagtcaatgtattacaacaacatcattgtcaaaggccattactgtaatgtaaattagtaactataaaataag-cta |
108 |
Q |
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| T |
9239121 |
aagaatatgcttaaactgaaaagaaactcaatgtattacaacaacatcattatcaaaggccattacagtaatgtaaattagta-ctatagtataattcta |
9239023 |
T |
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| Q |
109 |
gaaagagtaatcattatcataattaatttagttaagatcaacactatatacttgtaggctttttctgtgcgaggtttgtattgcatcgtgaagaattaga |
208 |
Q |
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| T |
9239022 |
gaaagagtaatggttatcataattaattgggttaagatcaacactatatacttgtaggcttgttctgtgcgaggcttgtattgcatcatgaagaattaga |
9238923 |
T |
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| Q |
209 |
tgataagcattagttagatagataacttgcaagttatcttgttggttagttataactaactaacttaggatgatc |
283 |
Q |
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| T |
9238922 |
tgataagcattagttagatagataacttgcaagttatcttgttggttagttataactaactaacttaggatgatc |
9238848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9260815 - 9260743
Alignment:
| Q |
16 |
atgcttaaactcaaaagaaagtcaatgtattacaacaacatcattgtcaaaggccattactgtaatgtaaatta |
89 |
Q |
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| T |
9260815 |
atgcttaaactgaaaagaaagtcaatatattacaagaacatca-tatcaaaggccattacagtaatctaaatta |
9260743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 9180878 - 9180828
Alignment:
| Q |
10 |
aagaatatgcttaaactcaaaagaaagtcaatgtattacaacaacatcatt |
60 |
Q |
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| T |
9180878 |
aagaacatgcttaaacccaaaagaaagtcaatggattacaacaacatcatt |
9180828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 9259013 - 9258952
Alignment:
| Q |
10 |
aagaatatgcttaaactcaaaagaaagtcaatgtattacaacaacatcattgtcaaaggcca |
71 |
Q |
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| T |
9259013 |
aagaacatgcttaaattgaaaagaaaattaatgtattacaacaagatcattatcaaaggcca |
9258952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1952 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1952
Description:
Target: scaffold1952; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 1115 - 1046
Alignment:
| Q |
12 |
gaatatgcttaaactcaaaagaaagtcaatgtattacaacaacatcattgtcaaaggccattactgtaat |
81 |
Q |
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| T |
1115 |
gaatatgcttaaactaaaaagaaactcaatatattacaacaacatcattatcaaaggccattacagtaat |
1046 |
T |
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