View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_high_14 (Length: 319)
Name: NF1327_high_14
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 95 - 288
Target Start/End: Original strand, 35354956 - 35355149
Alignment:
| Q |
95 |
tcattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacacc |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354956 |
tcattgatttcatgaacaacatgggtcattgcaactttgagttcattcctaagaaactcctctcttactttcccattttgaagtatctctcatacacacc |
35355055 |
T |
|
| Q |
195 |
atcgtaagttcaacaatgctaatgagcttcctaatttctagtgacattccatatgctaattgtttattttgtccgtgatatatttccacaggtt |
288 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35355056 |
atcgtaagttcaacaatgctaacgagcttcctaatttctagtcacattccatatgctaattgtttattttctccgtgatatatttccacaggtt |
35355149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 35380963 - 35381071
Alignment:
| Q |
96 |
cattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacacca |
195 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35380963 |
cattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttaaagtatctctcatacacacca |
35381062 |
T |
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| Q |
196 |
tcgtaagtt |
204 |
Q |
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||||||||| |
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| T |
35381063 |
tcgtaagtt |
35381071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 35370400 - 35370509
Alignment:
| Q |
95 |
tcattgatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacacc |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||||||| |||||||| |
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| T |
35370400 |
tcattgatttcatgaacaatatgggtcattgcaactttgagttctttcctaagaagctcttctcatactttccccaattgaagtatctctcttacacacc |
35370499 |
T |
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| Q |
195 |
atcgtaagtt |
204 |
Q |
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|||||||||| |
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| T |
35370500 |
atcgtaagtt |
35370509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 100 - 204
Target Start/End: Complemental strand, 19630215 - 19630111
Alignment:
| Q |
100 |
gatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgt |
199 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| | |||||||||||||| ||||||||||||| |
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| T |
19630215 |
gattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttcccctattgaagtatctctcgtacacaccatcgt |
19630116 |
T |
|
| Q |
200 |
aagtt |
204 |
Q |
| |
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||||| |
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| T |
19630115 |
aagtt |
19630111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 19684611 - 19684715
Alignment:
| Q |
100 |
gatttcatgaacaacatgggtcattgcaactttgagttctttcctaagaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgt |
199 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
19684611 |
gattttatgaacaacatgggtcattgcaattttgagttctttcctaagaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgt |
19684710 |
T |
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| Q |
200 |
aagtt |
204 |
Q |
| |
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||||| |
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|
| T |
19684711 |
aagtt |
19684715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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