View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_high_21 (Length: 252)
Name: NF1327_high_21
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_high_21 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 14161133 - 14160907
Alignment:
| Q |
29 |
actttgtggtgagtattcatacatattattacgtacatacgttgttctctcttg-tcatccttttcagatctgttatcaccagttaattttgccttaatt |
127 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14161133 |
actttgtggtgagtattcatacatattattacatacataccttgttctctcttgctaatccttttcagatctgttatcactagttaattttgccttaatt |
14161034 |
T |
|
| Q |
128 |
ttaatggttttttct--cttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatggtatcctgaag |
225 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14161033 |
ttaatggttttttttttcttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatgttatcctgaag |
14160934 |
T |
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| Q |
226 |
atgcaaatggaccacaactcaacaaaa |
252 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14160933 |
atgcaaatggaccacaactcaacaaaa |
14160907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 21424283 - 21424057
Alignment:
| Q |
29 |
actttgtggtgagtattcatacatattattacgtacatacgttgttctctcttg-tcatccttttcagatctgttatcaccagttaattttgccttaatt |
127 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21424283 |
actttgtggtgagtattcatacatattattacatacataccttgttctctcttgctaatccttttcagatctgttatcactagttaattttgccttaatt |
21424184 |
T |
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| Q |
128 |
ttaatggttttttct--cttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatggtatcctgaag |
225 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21424183 |
ttaatggttttttttttcttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatgttatcctgaag |
21424084 |
T |
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| Q |
226 |
atgcaaatggaccacaactcaacaaaa |
252 |
Q |
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||||||||||||||||||||||||||| |
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| T |
21424083 |
atgcaaatggaccacaactcaacaaaa |
21424057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 29706517 - 29706292
Alignment:
| Q |
29 |
actttgtggtgagtattcatacatattattacgtacatacgttgttctctcttg-tcatccttttcagatctgttatcaccagttaattttgccttaatt |
127 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29706517 |
actttgtggtgagtattcatacatattattacatacataccttgttctctcttgctaatccttttcagatctgttatcactagttaattttgccttaatt |
29706418 |
T |
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| Q |
128 |
ttaatggttttttct-cttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacacttaagaatggtatcctgaaga |
226 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
29706417 |
ttaatggtttttttttcttcataaattgtaggctagtaacattaattctggatgcaaatggaattggaatcaaggacgcttaagaatgttatcctgaaga |
29706318 |
T |
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| Q |
227 |
tgcaaatggaccacaactcaacaaaa |
252 |
Q |
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|||||||||||||||||||||||||| |
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| T |
29706317 |
tgcaaatggaccacaactcaacaaaa |
29706292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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