View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1327_high_4 (Length: 531)
Name: NF1327_high_4
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 3539988 - 3539737
Alignment:
| Q |
1 |
attggctatattattattgatactgattacaa-ttacatacatagtgtatacacaaccatgtaataataatgaaataatgaggaattaaagttgacgttg |
99 |
Q |
| |
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||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3539988 |
attggctatattattattgattctaattacaaattacatacatagtatatatacaaccatataataataatgaaataatgaggaattaaagttgacgttg |
3539889 |
T |
|
| Q |
100 |
ttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgt |
199 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3539888 |
ttgac-ttattctaagctacaactataacataatgacacaatgaattcaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgt |
3539790 |
T |
|
| Q |
200 |
gttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaacaa |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3539789 |
gttgactttgaaattgatgcatctagaaacagctgtacattaatgtctaacaa |
3539737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 3544411 - 3544161
Alignment:
| Q |
1 |
attggctatattattattgatactgattacaa-ttacatacatagtgtatacacaaccatgtaataataatgaaataatgaggaattaaagttgacgttg |
99 |
Q |
| |
|
||||||||||||||||||||| || ||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3544411 |
attggctatattattattgattctaattacaaattacatacatagtatatatacaaccatataataataatgaaataatgaggaattaaagttgacgttg |
3544312 |
T |
|
| Q |
100 |
ttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgt |
199 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3544311 |
ttgac-ttattctaagctacaactataacataatgacacaatgaattcaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgt |
3544213 |
T |
|
| Q |
200 |
gttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3544212 |
gttgactttgaaattgatgcatctagaaacagctgtacattaatgtctaaca |
3544161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 34695353 - 34695603
Alignment:
| Q |
1 |
attggctatattattattgatactgattacaa-ttacatacatagtgtatacacaaccatgtaataataatgaaataatgaggaattaaagttgacgttg |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34695353 |
attggctatattattattgatacagattacaaattacaaacatagtatatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgttg |
34695452 |
T |
|
| Q |
100 |
ttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgt |
199 |
Q |
| |
|
||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
34695453 |
ttgac-ttattctaagctacatctataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgttgt |
34695551 |
T |
|
| Q |
200 |
gttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34695552 |
gttgactttgaaattgatgcatctagaaacagctgtacattaatgtctaaca |
34695603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 5398991 - 5398740
Alignment:
| Q |
1 |
attggctatattattattgata-ctgattacaa-ttacatacatagtgtatacacaaccatgtaataataatgaaataatgaggaattaaagttgacgtt |
98 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5398991 |
attggctatattataattgatagcagattacaaattacaaacatagtatatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgtt |
5398892 |
T |
|
| Q |
99 |
gttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatg |
198 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5398891 |
gttgac-ttattctaagctacaactataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatg |
5398793 |
T |
|
| Q |
199 |
tgttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5398792 |
tgttgactttgaaattgatgcatctagaaacagctgtacattaatgtctaaca |
5398740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 5403425 - 5403174
Alignment:
| Q |
1 |
attggctatattattattgata-ctgattacaa-ttacatacatagtgtatacacaaccatgtaataataatgaaataatgaggaattaaagttgacgtt |
98 |
Q |
| |
|
|||||||||||||| ||||||| | |||||||| ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5403425 |
attggctatattataattgatagcagattacaaattacaaacatagtatatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgtt |
5403326 |
T |
|
| Q |
99 |
gttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatg |
198 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5403325 |
gttgac-ttattctaagctacaactataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatg |
5403227 |
T |
|
| Q |
199 |
tgttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5403226 |
tgttgactttgaaattgatgcatctagaaacagctgtacattaatgtctaaca |
5403174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 252 - 401
Target Start/End: Original strand, 4918123 - 4918272
Alignment:
| Q |
252 |
aaactttgatggcataagtttcaatcacatcctcagcatcataagttaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4918123 |
aaactttgatggcataagtttcaatcacatcctcagcatcataagctaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
4918222 |
T |
|
| Q |
352 |
ctttctctcagcatcccttaagaagcattgcatcctctttaattcaattt |
401 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4918223 |
ctttctctcagcatcccttaagaaacattgcatcctctttagttcaattt |
4918272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 252 - 401
Target Start/End: Original strand, 4929981 - 4930130
Alignment:
| Q |
252 |
aaactttgatggcataagtttcaatcacatcctcagcatcataagttaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4929981 |
aaactttgatggcataagtttcaatcacatcctcaacatcataagctaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctg |
4930080 |
T |
|
| Q |
352 |
ctttctctcagcatcccttaagaagcattgcatcctctttaattcaattt |
401 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4930081 |
ctttctctcagcatcccttaagaaacattgcatcctctttagttcaattt |
4930130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 57 - 251
Target Start/End: Complemental strand, 39728989 - 39728796
Alignment:
| Q |
57 |
catgtaataataatgaaataatgaggaattaaagttgacgttgttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaata |
156 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||| |||| |
|
|
| T |
39728989 |
catgtaataataatgaaataatgataaattaagattgacgttgttgac-ttattctaagctacagctataacataatgacacaatgaattgaaataaata |
39728891 |
T |
|
| Q |
157 |
tttgcaatctgatgcaataaactactgatatgaaaattgatgtgttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
251 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||| |||| ||||||| ||| |||| |||||||||||||| |
|
|
| T |
39728890 |
tttgtaatttgatgcaataaactactgatatggaaattgatgtgttgactttaaaatggatgtatctagagacatatgtaaattaatgtctaaca |
39728796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 259 - 388
Target Start/End: Complemental strand, 4887337 - 4887208
Alignment:
| Q |
259 |
gatggcataagtttcaatcacatcctcagcatcataagttaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctgctttctc |
358 |
Q |
| |
|
|||||||||| | ||||||| |||||| |||| |||| || |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4887337 |
gatggcataattctcaatcagatcctcgacatcgtaagctagttttctaatttctgatatcaaattctttatagtctcaccaccttcatcctgctttcta |
4887238 |
T |
|
| Q |
359 |
tcagcatcccttaagaagcattgcatcctc |
388 |
Q |
| |
|
||||| || ||||||||||||| ||||||| |
|
|
| T |
4887237 |
tcagcttctcttaagaagcatttcatcctc |
4887208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 416 - 503
Target Start/End: Original strand, 4919241 - 4919328
Alignment:
| Q |
416 |
gataaaagtaaaagtgagcacatgaaattaaatttgaaacatcttcaagtacaaaaatcagttaaaacaatattcccccataagaagc |
503 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4919241 |
gataaaagtaaaactgagcacattgaattaaatttgaaacatcatcaagtacaaaaatcagttaaaacaatattccaccataagaagc |
4919328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 6516905 - 6517155
Alignment:
| Q |
1 |
attggctatattattattgatactgattacaa-ttacatacatagtgtatacacaaccatgtaataataatgaaataatgaggaattaaagttgacgttg |
99 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6516905 |
attggctatattataattgatacagattacaaattacaaacatagtatatatacaaccatgtaataataatgaaataatgaggaattaaagttgacgttg |
6517004 |
T |
|
| Q |
100 |
ttgaccttattctaagctacaactttagcataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgt |
199 |
Q |
| |
|
||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6517005 |
ttgac-ttattctaagctacagctataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattggtgt |
6517103 |
T |
|
| Q |
200 |
gttgactttgaaattgatgcatctagaaacaactgtacattaatgtctaaca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6517104 |
gttgactttgaaattgatgcatctagaaacagctgtacattaatgtctaaca |
6517155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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