View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_high_9 (Length: 435)
Name: NF1327_high_9
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 51 - 430
Target Start/End: Original strand, 3355910 - 3356289
Alignment:
| Q |
51 |
caaatcaccaaaacaaaattcatttacaacttattaatctcctactttggatcttgtacatcatagaagacgtttaaatatggctatgtccaggtgcaac |
150 |
Q |
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| T |
3355910 |
caaatcaccaaaacaaaattcatttacgacttattaatctcctactttggatcttgtacatcatagaagacgtttaaatatggctatgtccaggtgcaac |
3356009 |
T |
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| Q |
151 |
aatgaagaccagaacacatttgcgtgaatggtcatcttctaagttcttccggctctaaattggattttaacagctaatttacttattataatgatgatgt |
250 |
Q |
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| T |
3356010 |
aatgaagaccagaacacatttgcgtgaatggtcatcttctaagttcttctggctctaaattggattttaacagctaatttacttattataatgatgatgt |
3356109 |
T |
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| Q |
251 |
tgattggattaaatactaagtttctgaaaataaattaaataatcatatatactcttttcttcttggcatgcatgtcaggaacatgacctgtaattgtgta |
350 |
Q |
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| T |
3356110 |
tgattggattaaatactaagtttctgaaaataaattaaataatcatatatactcttttcttcttggcatgcatgtcaggaacatgacctgtaattgtgta |
3356209 |
T |
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| Q |
351 |
cacaattattatttctcaagttagaatcctctcgttgttgaagcatgcgtgctgtccaatttcatcgtagtattatctac |
430 |
Q |
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| T |
3356210 |
cacaattattatttctcaagttagaatcctctcgttgttgaagcatgcgtgctgtcccatttcatcgtaatattttctac |
3356289 |
T |
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