View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1327_low_10 (Length: 394)
Name: NF1327_low_10
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1327_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 30 - 383
Target Start/End: Complemental strand, 31480918 - 31480565
Alignment:
| Q |
30 |
ttattgaaatactataacatgttactgaagctctttagttacactaactttactcatacatcccacctaacaaatgatggtggtctgtattcgagataag |
129 |
Q |
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| T |
31480918 |
ttattgaaatactataacatgttactgaagctctttagttacattgactttactcatacattccacctaataaatgatggtggtctgtattcgagataag |
31480819 |
T |
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| Q |
130 |
aactagagaagatgttgttgctatttttgtaagcattgcatttaggccttgacttttatcccacaaaattcattcaaatttactttaaaatatccctacg |
229 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31480818 |
aactagagaagatgttgttgctgtttttgtaagcattgcatttaggccttgactttcatcccacaaaactcattcaaatttactttaaaatatccctacg |
31480719 |
T |
|
| Q |
230 |
gtccttgatgaaattttcctatttggtcgggacttttatcatcgagtgattggtttggtttcacaatacaaaccaatataattggttcatttttcccata |
329 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31480718 |
gtccttgataaaattttccaatttggtcgggacttttatcatcgagtgattggtttggtttgacaatacaaaccaatataattggttcatttttcccata |
31480619 |
T |
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| Q |
330 |
ttaggatccaaaccaatcaaatccaacctctattggtccgagcatcagtttcat |
383 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
31480618 |
ttaggatccaaactaatcaaatccgacctctattggtccgagcatcagtttcat |
31480565 |
T |
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