View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1327_low_12 (Length: 343)

Name: NF1327_low_12
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1327_low_12
NF1327_low_12
[»] chr7 (3 HSPs)
chr7 (240-315)||(44493222-44493297)
chr7 (18-111)||(44492580-44492673)
chr7 (179-242)||(44492741-44492811)


Alignment Details
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 44493222 - 44493297
Alignment:
Q  240 ttataggaaagggctgctactactagattagtcagtgtagatatatagaacgaaatgatacaagtatgcttaacct 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44493222 ttataggaaagggctgctactactagattagtcagtgtagatatatagaacgaaatgatacaagtatgcttaacct 44493297  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 44492580 - 44492673
Alignment:
Q  18 gtgagatgaacatttgtttataagtacatagtttttataaaccgattttgtatagttgaattagacacgtacactgagtagttcagggggatcc 111  Q
    |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  44492580 gtgatatgaacatttgtttataagtagatagtttttataaatcgattttgtatagttgaattaaacacgtacattgagtagttcagggggatcc 44492673  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 44492741 - 44492811
Alignment:
Q  179 taacatgaaaaattgaatctaaatttggttactt-------gggttccccaacctctaagttgctttgtta 242  Q
    |||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  44492741 taacatgaaaaattaaatctaaatttggttacttgggacttgggttccccaacctctaagttgctttgtta 44492811  T

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