View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1327_low_13 (Length: 321)

Name: NF1327_low_13
Description: NF1327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1327_low_13
NF1327_low_13
[»] chr5 (1 HSPs)
chr5 (27-321)||(11696411-11696705)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 27 - 321
Target Start/End: Original strand, 11696411 - 11696705
Alignment:
Q  27 tcaagttcatggtcatgtttttaagatgggtcttgaaggtgatgtcattgtgcaaaatagtttgatcaacatgtatggtaagtgtggggagataaagaat 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11696411 tcaagttcatggtcatgtttttaagatgggtcttgaaggtgatgtcattgtgcaaaatagtttgatcaacatgtatggtaagtgtggggagataaagaat 11696510  T
Q  127 gcttgtgatgtgtttaatggaatggatgaaaagagtgttgcttcatggagtgctattattggtgctcatgcttgtgtggaaatgtggaatgaatgtgtaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11696511 gcttgtgatgtgtttaatggaatggatgaaaagagtgttgcttcatggagtgctattattggtgctcatgcttgtgtggaaatgtggaatgaatgtctaa 11696610  T
Q  227 tgcttcttgggaaaatgagtagtgagggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgcttgcactcatctagggtctcct 321  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11696611 tgcttcttgggaaaatgagtagtgaaggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgcttgcactcatttagggtctcct 11696705  T

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